miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29124_hsa-mir-1273:mirbase
Length = 103
Score = 186 bits (94), Expect = 2e-48
Identities = 100/102 (98%)
Strand = Plus / Plus
Query: 1 tgaggcaggaaaattgcttgaacctgggtggtggaggttgcagtgagccaagattgcgcc 60
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaggcaggagaattgcttgaacccgggtggtggaggttgcagtgagccaagattgcgcc 60
Query: 61 actgcactccagcctgggcgacaaagcaagactctttcttgg 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actgcactccagcctgggcgacaaagcaagactctttcttgg 102
>31332_ppy-mir-1273:mirbase
Length = 103
Score = 137 bits (69), Expect = 2e-33
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 1 tgaggcaggaaaattgcttgaacctgggtggtggaggttgcagtgagccaagattgcgcc 60
|||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||
Sbjct: 1 tgaggcaggagaattgcttgaacccgggaggtggaggttgcagtgagccaagatcacgcc 60
Query: 61 actgcactccagcctgggcgacaaagcaagactcttt 97
|||||||||||||||||| |||| |||||||||||||
Sbjct: 61 actgcactccagcctgggtgacagagcaagactcttt 97
>29127_hsa-mir-1273e:mirbase
Length = 102
Score = 83.8 bits (42), Expect = 2e-17
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 1 tgaggcaggaaaattgcttgaacctgggtggtggaggttgcagtgagccaagattgcgcc 60
|||||||||| ||||||||||||| || ||||||| ||||||||||| |||| | |||
Sbjct: 1 tgaggcaggagaattgcttgaacccaggaagtggaggctgcagtgagccgagatcgagcc 60
Query: 61 actgcactccagcctgggcgacaaagcaagactc 94
|||| ||||||||||||| |||| ||| ||||||
Sbjct: 61 actgtactccagcctgggtgacacagcgagactc 94
>29126_hsa-mir-1273d:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 8e-11
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 34 gaggttgcagtgagccaagattgcgccactgcactccagcctgggcgacaa 84
|||| |||||||||||||||| | ||||||||||| ||||||||| |||||
Sbjct: 24 gaggctgcagtgagccaagatcgtgccactgcacttcagcctgggtgacaa 74
>29659_hsa-mir-4459:mirbase
Length = 66
Score = 58.0 bits (29), Expect = 1e-09
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 30 ggtggaggttgcagtgagccaagattgcgccactgcactccagcctggg 78
||||||||||||||||||||||||| | | ||||| |||||||||||||
Sbjct: 18 ggtggaggttgcagtgagccaagatcgtggcactg-actccagcctggg 65
>29128_hsa-mir-1273f:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 13 attgcttgaacctgggtggtggaggttgcagtgagc 48
||||||||| |||||| | |||||||||||||||||
Sbjct: 11 attgcttgagcctgggagatggaggttgcagtgagc 46
>29129_hsa-mir-1273g:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 59 ccactgcactccagcctgggcgacaaagcaagac 92
|||||||||||||||||| | |||| ||||||||
Sbjct: 58 ccactgcactccagcctgagtgacagagcaagac 91
>31147_ppy-mir-566:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 8e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 12 aattgcttgaacctgggtggtggaggttgcagtgagc 48
||||||||||||| ||| || | ||||||||||||||
Sbjct: 54 aattgcttgaacccgggaggcgaaggttgcagtgagc 90
>31314_ppy-mir-1254:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 53 attgcgccactgcactccagcctgggcgacaaa 85
|||| |||||||||||||||||| ||| |||||
Sbjct: 50 attgtgccactgcactccagcctaggcaacaaa 82
