miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU660894.1/143713-143848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 7 tgtgtactccctccgttccaaaata 31
|||||||||||||||||||||||||
Sbjct: 136 tgtgtactccctccgttccaaaata 112
>RF00906;MIR1122;AAAA02034559.1/3133-3272 39946:Oryza sativa
Indica Group
Length = 140
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatatag 34
||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaaatatag 28
>RF00906;MIR1122;AAAA02020856.1/51643-51799 39946:Oryza sativa
Indica Group
Length = 157
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatatag 34
||||||||||||||||||||||||
Sbjct: 153 tactccctccgttccaaaatatag 130
>RF00906;MIR1122;AAAA02003905.1/26512-26644 39946:Oryza sativa
Indica Group
Length = 133
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatatag 34
||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaaatatag 28
>RF00906;MIR1122;AACV01008227.1/1-122 39947:Oryza sativa Japonica
Group
Length = 122
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatatag 34
||||||||||||||||||||||||
Sbjct: 3 tactccctccgttccaaaatatag 26
>RF00906;MIR1122;AACV01008813.1/4556-4689 39947:Oryza sativa
Japonica Group
Length = 134
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatatag 34
||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaaatatag 28
>RF00906;MIR1122;AP008217.1/23244951-23245072 39947:Oryza sativa
Japonica Group
Length = 122
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatatag 34
||||||||||||||||||||||||
Sbjct: 118 tactccctccgttccaaaatatag 95
>RF00906;MIR1122;CU302289.7/103800-103679 3880:Medicago truncatula
(barrel medic)
Length = 122
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatata 33
|||||||||||||||||||||||
Sbjct: 118 tactccctccgttccaaaatata 96
>RF00906;MIR1122;AC152348.7/114834-114678 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatata 33
|||||||||||||||||||||||
Sbjct: 153 tactccctccgttccaaaatata 131
>RF00906;MIR1122;AC166046.15/79888-79744 3880:Medicago truncatula
(barrel medic)
Length = 145
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatata 33
|||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaaatata 27
>RF00906;MIR1122;AC140029.19/78088-78242 3880:Medicago truncatula
(barrel medic)
Length = 155
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatata 33
|||||||||||||||||||||||
Sbjct: 151 tactccctccgttccaaaatata 129
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 tgtactccctccgttccaaaata 31
|||||||||||||||||||||||
Sbjct: 103 tgtactccctccgttccaaaata 81
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtactccctccgttccaaaata 31
|||||||||||||||||||||||
Sbjct: 3 tgtactccctccgttccaaaata 25
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatata 33
|||||||||||||||||||||||
Sbjct: 163 tactccctccgttccaaaatata 141
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatata 33
|||||||||||||||||||||||
Sbjct: 166 tactccctccgttccaaaatata 144
>RF00906;MIR1122;AAAA02030656.1/4636-4541 39946:Oryza sativa
Indica Group
Length = 96
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatata 33
|||||||||||||||||||||||
Sbjct: 92 tactccctccgttccaaaatata 70
>RF00906;MIR1122;AC079888.10/111519-111651 39947:Oryza sativa
Japonica Group
Length = 133
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatata 33
|||||||||||||||||||||||
Sbjct: 129 tactccctccgttccaaaatata 107
>RF00906;MIR1122;AACV01008275.1/11041-11180 39947:Oryza sativa
Japonica Group
Length = 140
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatata 33
|||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaaatata 27
>RF00906;MIR1122;AAAA02015448.1/20736-20847 39946:Oryza sativa
Indica Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatata 33
|||||||||||||||||||||||
Sbjct: 108 tactccctccgttccaaaatata 86
>RF00906;MIR1122;AP008218.1/18423778-18423640 39947:Oryza sativa
Japonica Group
Length = 139
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 actccctccgttccaaaatatag 34
|||||||||||||||||||||||
Sbjct: 6 actccctccgttccaaaatatag 28
>RF00906;MIR1122;AP008209.1/34516197-34516103 39947:Oryza sativa
Japonica Group
Length = 95
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatata 33
|||||||||||||||||||||||
Sbjct: 91 tactccctccgttccaaaatata 69
