miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31345_ppy-mir-1289-1:mirbase
Length = 145
Score = 270 bits (136), Expect = 3e-73
Identities = 142/144 (98%)
Strand = Plus / Plus
Query: 1 ttctcaatttttagtaggaattaaaaacaaaactggtaaatgcagactcttggattccac 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcttaatttttagtaggaattaaaaacaaaactggtaaatgcagactcttggattccac 60
Query: 61 ccccagagaatccctaaaccgggggtggagtccaggaatctgcattttagaaagtaccca 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccccagagaatccgtaaaccgggggtggagtccaggaatctgcattttagaaagtaccca 120
Query: 121 gggtgattctgatacattgggaac 144
||||||||||||||||||||||||
Sbjct: 121 gggtgattctgatacattgggaac 144
>29146_hsa-mir-1289-1:mirbase
Length = 144
Score = 262 bits (132), Expect = 6e-71
Identities = 142/144 (98%), Gaps = 1/144 (0%)
Strand = Plus / Plus
Query: 1 ttctcaatttttagtaggaattaaaaacaaaactggtaaatgcagactcttggattccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 ttctcaatttttagtaggaattaaaaacaaaactggtaaatgcagactcttggtttccac 60
Query: 61 ccccagagaatccctaaaccgggggtggagtccaggaatctgcattttagaaagtaccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccccagagaatccctaaaccgggggtggagtccaggaatctgcattttagaaagtaccca 120
Query: 121 gggtgattctgatacattgggaac 144
|||||||||||||| |||||||||
Sbjct: 121 gggtgattctgata-attgggaac 143
>29147_hsa-mir-1289-2:mirbase
Length = 111
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 gtggagtccaggaatctgcatttt 108
||||||||||||||||||||||||
Sbjct: 69 gtggagtccaggaatctgcatttt 92
>30702_ptr-mir-1289-2:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 gtggagtccaggaatctgcatttt 108
||||||||||||||||||||||||
Sbjct: 69 gtggagtccaggaatctgcatttt 92
>27294_eca-mir-1289:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 tggagtccaggaatctgcatttt 108
|||||||||||||||||||||||
Sbjct: 63 tggagtccaggaatctgcatttt 85
