miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29156_hsa-mir-1298:mirbase
Length = 112
Score = 220 bits (111), Expect = 2e-58
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1 gacgaggagttaagagttcattcggctgtccagatgtatccaagtaccctgtgttatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacgaggagttaagagttcattcggctgtccagatgtatccaagtaccctgtgttatttg 61
Query: 61 gcaataaatacatctgggcaactgactgaacttttcacttttcatgactca 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gcaataaatacatctgggcaactgactgaacttttcacttttcatgactca 112
>31353_ppy-mir-1298:mirbase
Length = 112
Score = 212 bits (107), Expect = 4e-56
Identities = 110/111 (99%)
Strand = Plus / Plus
Query: 1 gacgaggagttaagagttcattcggctgtccagatgtatccaagtaccctgtgttatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacgaggagttaagagttcattcggctgtccagatgtatccaagtaccctgtgttatttg 61
Query: 61 gcaataaatacatctgggcaactgactgaacttttcacttttcatgactca 111
|||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 62 gcaataaatacatctgggcaactgactgaacttttcacttttcaagactca 112
>27298_eca-mir-1298:mirbase
Length = 111
Score = 168 bits (85), Expect = 5e-43
Identities = 103/108 (95%), Gaps = 2/108 (1%)
Strand = Plus / Plus
Query: 4 gaggagttaagagttcattcggctgtccagatgtatccaagtaccctgtgttatttggca 63
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 6 gaggagttaagagttcattcggctgtccagatgtatccaagtacccagt--tatttggca 63
Query: 64 ataaatacatctgggcaactgactgaacttttcacttttcatgactca 111
|||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 64 ataaatacatctgggcaactgattgaacttttcgcttttcatgactca 111
>33485_bta-mir-1298:mirbase
Length = 108
Score = 137 bits (69), Expect = 2e-33
Identities = 84/88 (95%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 8 agttaagagttcattcggctgtccagatgtatccaagtaccctgtgttatttggcaataa 67
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 9 agttaagagttcattcggctgtccagatgtatccaagtaccc--tgatatttggcaataa 66
Query: 68 atacatctgggcaactgactgaactttt 95
|||||||||||||||||| |||||||||
Sbjct: 67 atacatctgggcaactgattgaactttt 94
>32402_mmu-mir-1298:mirbase
Length = 98
Score = 131 bits (66), Expect = 1e-31
Identities = 87/93 (93%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 4 gaggagttaagagttcattcggctgtccagatgtatccaagtaccctgtgttatttggca 63
|||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 1 gaggggttaagagttcattcggctgtccagatgtacccaagtaccc--tgttatttggca 58
Query: 64 ataaatacatctgggcaactgactgaacttttc 96
||| |||||||||||||||||| ||||||||||
Sbjct: 59 atacatacatctgggcaactgattgaacttttc 91
