miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00017;Metazoa_SRP;AADA01016412.1/5183-5480 9598:Pan troglodytes
(chimpanzee)
Length = 298
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 48 attttagagacggggtcttgctctgttgccaggct 82
||||| ||||||| |||||||||||||||||||||
Sbjct: 151 atttttgagacggagtcttgctctgttgccaggct 117
>RF00017;Metazoa_SRP;AADB02010026.1/407128-406819 9606:Homo sapiens
(human)
Length = 310
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 48 attttagagacggggtcttgctctgttgccaggct 82
||||| ||||||| |||||||||||||||||||||
Sbjct: 151 atttttgagacggagtcttgctctgttgccaggct 117
>RF00017;Metazoa_SRP;ABBA01055509.1/28016-28297 9606:Homo sapiens
(human)
Length = 282
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 2 ctgggcaacatagcgagacctcaactcta 30
||||||||||||||||||||||| |||||
Sbjct: 254 ctgggcaacatagcgagacctcatctcta 282
>RF00017;Metazoa_SRP;AANU01294305.1/11439-11720 9544:Macaca mulatta
(rhesus monkey)
Length = 282
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 2 ctgggcaacatagcgagacctcaactcta 30
||||||||||||||||||||||| |||||
Sbjct: 254 ctgggcaacatagcgagacctcatctcta 282
>RF00017;Metazoa_SRP;AAGV020260256.1/635-368 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 268
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ctgggcaacatagcgagacctcaactct 29
||||||||||||||||||||||| ||||
Sbjct: 240 ctgggcaacatagcgagacctcatctct 267
>RF00017;Metazoa_SRP;AAQR01145962.1/569-854 30611:Otolemur garnettii
(small-eared galago)
Length = 286
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ctgggcaacatagcgagacctcaactct 29
||||||||||||||||||||||| ||||
Sbjct: 258 ctgggcaacatagcgagacctcatctct 285
>RF00017;Metazoa_SRP;ABGA01386541.1/3134-2852 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 54 gagacggggtcttgctctgttgcc 77
||||||||||||||||||||||||
Sbjct: 281 gagacggggtcttgctctgttgcc 258
>RF00017;Metazoa_SRP;AANU01165941.1/2013-1713 9544:Macaca mulatta
(rhesus monkey)
Length = 301
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ctgggcaacatagcgagacctcaactct 29
||||||||||||||||||||||| ||||
Sbjct: 273 ctgggcaacatagcgagacctcatctct 300
>RF00017;Metazoa_SRP;ABGA01085104.1/2727-3049 9601:Pongo abelii
(Sumatran orangutan)
Length = 323
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 48 attttagagacggggtcttgctctgttgccaggct 82
||||| |||| || |||||||||||||||||||||
Sbjct: 151 atttttgagatggagtcttgctctgttgccaggct 117
>RF00017;Metazoa_SRP;AANU01105558.1/4899-5202 9544:Macaca mulatta
(rhesus monkey)
Length = 304
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 ctgggcaacatagcgagacctca 24
|||||||||||||||||||||||
Sbjct: 276 ctgggcaacatagcgagacctca 298
>RF00017;Metazoa_SRP;ABDC01484844.1/1276-991 30608:Microcebus
murinus (gray mouse lemur)
Length = 286
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 52 tagagacggggtcttgctctgttgcc 77
|||||||||||||||||| |||||||
Sbjct: 286 tagagacggggtcttgctatgttgcc 261
>RF00017;Metazoa_SRP;AACZ02008236.1/6095-6390 9598:Pan troglodytes
(chimpanzee)
Length = 296
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 49 ttttagagacggggtcttgctctgttgccaggct 82
|||| ||||||| |||||||||||| ||||||||
Sbjct: 150 tttttgagacggagtcttgctctgtcgccaggct 117
>RF00017;Metazoa_SRP;AL359385.28/37801-37507 9606:Homo sapiens
(human)
Length = 295
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 52 tagagacggggtcttgctctgttgcc 77
|||||||||||||| |||||||||||
Sbjct: 295 tagagacggggtctcgctctgttgcc 270
>RF00017;Metazoa_SRP;AANU01287303.1/12172-12472 9544:Macaca mulatta
(rhesus monkey)
Length = 301
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 49 ttttagagacggggtcttgctctgttgccaggct 82
|||| |||| ||||| ||||||||||||||||||
Sbjct: 284 tttttgagatggggtgttgctctgttgccaggct 251
>RF00017;Metazoa_SRP;AANU01154272.1/1391-1695 9544:Macaca mulatta
(rhesus monkey)
Length = 305
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 gggcaacatagcgagacctcaactct 29
||||||||||||||||||||| ||||
Sbjct: 279 gggcaacatagcgagacctcatctct 304
