miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29173_hsa-mir-1306:mirbase
Length = 85
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 tgagcagtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgagcagtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttgg 61
Query: 61 ctctggtggtgatggacagtccga 84
||||||||||||||||||||||||
Sbjct: 62 ctctggtggtgatggacagtccga 85
>31364_ppy-mir-1306:mirbase
Length = 85
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 tgagcagtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgagcagtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttgg 61
Query: 61 ctctggtggtgatggacagtccga 84
||||||||||||||||||||||||
Sbjct: 62 ctctggtggtgatggacagtccga 85
>32403_mmu-mir-1306:mirbase
Length = 79
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 5 cagtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctct 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 cagtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctct 60
Query: 65 ggtggtgatggacagtccg 83
|||||||||||||||||||
Sbjct: 61 ggtggtgatggacagtccg 79
>32404_mmu-mir-1306:mirbase
Length = 79
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 5 cagtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctct 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 cagtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctct 60
Query: 65 ggtggtgatggacagtccg 83
|||||||||||||||||||
Sbjct: 61 ggtggtgatggacagtccg 79
>34145_ssc-mir-1306:mirbase
Length = 80
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 7 gtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctgg 66
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 60
Query: 67 tggtgatggacagtccga 84
||||||||||||| ||||
Sbjct: 61 tggtgatggacaggccga 78
>34146_ssc-mir-1306:mirbase
Length = 80
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 7 gtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctgg 66
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 60
Query: 67 tggtgatggacagtccga 84
||||||||||||| ||||
Sbjct: 61 tggtgatggacaggccga 78
>25675_xla-mir-1306:mirbase
Length = 85
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 9 ctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctggtg 68
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10 ctccaccacctcccctgcaaacgtccagtgacgcagaggtaatggacgttggctctggtg 69
Query: 69 gtgatggacagtc 81
|||||||||||||
Sbjct: 70 gtgatggacagtc 82
>26047_gga-mir-1306:mirbase
Length = 69
Score = 121 bits (61), Expect = 8e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 10 tccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctggtgg 69
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 tccaccacctcccctgcaaacgtccagtgacgcagaggtaatggacgttggctctggtgg 60
Query: 70 tgatggaca 78
|||||||||
Sbjct: 61 tgatggaca 69
>26914_cfa-mir-1306:mirbase
Length = 58
Score = 107 bits (54), Expect = 1e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 14 ccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctggtggtg 71
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 ccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtggtg 58
>33487_bta-mir-1306:mirbase
Length = 58
Score = 107 bits (54), Expect = 1e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 14 ccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctggtggtg 71
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 ccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtggtg 58
