miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01014;mir-1306;AAIY01554338.1/803-730 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 74
Score = 133 bits (67), Expect = 4e-31
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 5 cagtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctct 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 cagtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctct 60
Query: 65 ggtggtgatgg 75
|||||||||||
Sbjct: 61 ggtggtgatgg 71
>RF01014;mir-1306;BAAE01177956.1/1380-1307 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 111 bits (56), Expect = 1e-24
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 9 ctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctggtg 68
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 5 ctccaccacctcccctgcaaacgtccagtgacgcagaggtaatggacgttagctctggtg 64
Query: 69 gtgatgga 76
||||||||
Sbjct: 65 gtgatgga 72
>RF01014;mir-1306;ABQO010269158.1/2006-1933 9315:Macropus eugenii
(tammar wallaby)
Length = 74
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 9 ctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctggtg 68
|||||||| |||||||||||| |||||||| |||||| |||||||| |||||||||||||
Sbjct: 5 ctccaccagctcccctgcaaaagtccagtgatgcagacgtaatggatgttggctctggtg 64
Query: 69 gtgatggaca 78
||| ||||||
Sbjct: 65 gtgttggaca 74
>RF01014;mir-1306;AAVX01501338.1/278-205 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 89.7 bits (45), Expect = 5e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 9 ctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctggtg 68
|||||||||||||||||||||||||||||| || ||||| ||||||||||||| ||||
Sbjct: 5 ctccaccacctcccctgcaaacgtccagtgaggccgaggttatggacgttggctgcggtg 64
Query: 69 gtgatggac 77
|||||||||
Sbjct: 65 gtgatggac 73
>RF01014;mir-1306;AAGW01545204.1/4216-4143 9986:Oryctolagus
cuniculus (rabbit)
Length = 74
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 6 agtctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctg 65
|||||||||||||||| |||||| |||||||| ||||| |||||||||| |||||||||
Sbjct: 2 agtctccaccacctccgttgcaaatgtccagtgatgcagtggtaatggacattggctctg 61
Query: 66 gtggtga 72
|| ||||
Sbjct: 62 gtagtga 68
>RF01014;mir-1306;ABVD01368311.1/815-888 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 74
Score = 75.8 bits (38), Expect = 8e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 9 ctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctggtg 68
|||| |||||||||||||||| ||| |||| |||||| ||||| || ||||| |||||||
Sbjct: 5 ctcctccacctcccctgcaaatgtctagtgatgcagaagtaatagatgttggatctggtg 64
Query: 69 gtgatggaca 78
||||||||||
Sbjct: 65 gtgatggaca 74
>RF01014;mir-1306;ABVD01062991.1/6561-6634 9358:Choloepus
hoffmanni (Hoffmann's two-fingered sloth)
Length = 74
Score = 46.1 bits (23), Expect = 7e-05
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 8 tctccaccacctcccctgcaaacgtccagtggtgcagaggtaatggacgttggctctggt 67
|||||| ||||| ||||||||||| | || ||||||||||| | ||| |||| ||||
Sbjct: 4 tctccagcaccttgcctgcaaacgttccctgatgcagaggtaacaggcgtcggctgtggt 63
Query: 68 ggtgatggaca 78
|||||||||||
Sbjct: 64 ggtgatggaca 74
