miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01038;mir-1307;ABRQ01134390.1/3319-3220 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 159 bits (80), Expect = 1e-38
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 26 cactgcctaccaatctcgaccggacctcgaccggctcgtctgtgttgccaatcgactcgg 85
|||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cactgcctgccgacctcgaccggacctcgaccggctcgtctgtgttgccaatcgactcgg 65
Query: 86 cgtggcgtcggtcgtggtagataggcggtcat 117
||||||||||||||||||||||||||||||||
Sbjct: 66 cgtggcgtcggtcgtggtagataggcggtcat 97
>RF01038;mir-1307;AAPE01033106.1/5936-5847 59463:Myotis lucifugus
(little brown bat)
Length = 90
Score = 75.8 bits (38), Expect = 1e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 76 atcgactcggcgtggcgtcggtcgtggtagataggcggtcat 117
||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 46 atcgactcggcgtggcgtcggtcgtggtagataggtggtcat 87
>RF01038;mir-1307;AAPE01621437.1/1559-1459 59463:Myotis lucifugus
(little brown bat)
Length = 101
Score = 73.8 bits (37), Expect = 6e-13
Identities = 79/89 (88%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 31 cctaccaatctcgaccggacctcgaccgg-ctcgtctgtgttgccaatcgactcggcgtg 89
|||| ||||||||||||||| |||||||| || || | || ||||||||||||||||||
Sbjct: 11 cctaacaatctcgaccggac-tcgaccgggctagtataagtagccaatcgactcggcgtg 69
Query: 90 g-cgtcggtcgtggtagataggcggtcat 117
| |||||||||||||||||||| ||||||
Sbjct: 70 ggcgtcggtcgtggtagataggtggtcat 98
