miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 127 bits (64), Expect = 3e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 15 ctgtatataccccgtagatccgaatttgtgtaaggaattttgtggtcacaaattcgtatt 74
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 ctgtatataccctgtagatccgaatttgtgtaaggaattttgtgatcacaaattcgtatc 60
Query: 75 taggggaatatgtagt 90
||||||||||||||||
Sbjct: 61 taggggaatatgtagt 76
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 73.8 bits (37), Expect = 4e-13
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 22 taccccgtagatccgaatttgtgtaaggaattttgtggtcacaaattcgtatttagggga 81
||||| |||||||||||||||||||| | | ||| |||||||||||||||| |||||||
Sbjct: 8 taccctgtagatccgaatttgtgtaaaggaagttg-ggtcacaaattcgtatctagggga 66
Query: 82 atatgtagt 90
|||||||||
Sbjct: 67 atatgtagt 75
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 65.9 bits (33), Expect = 1e-10
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 18 tatataccccgtagatccgaatttgtgtaaggaattttgtggtcacaaattcgtatttag 77
||||||||| |||||||||||||||||| || |||||||| ||||||||||| |||
Sbjct: 4 tatataccctgtagatccgaatttgtgttgacaaaattgtggtcgcaaattcgtatctag 63
Query: 78 gggaatatgtagt 90
|||| ||||||||
Sbjct: 64 gggagtatgtagt 76
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 58 ggtcacaaattcgtatttaggggaatatgtagt 90
|||||||||||||||| ||||||| ||||||||
Sbjct: 44 ggtcacaaattcgtatctaggggagtatgtagt 76
>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 75
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 15 ctgtatataccccgtagatccgaatttgtgt 45
|||||| ||||| ||||||||||||||||||
Sbjct: 1 ctgtatgtaccctgtagatccgaatttgtgt 31
