miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730902.1/34504-34625 15368:Brachypodium
distachyon
Length = 122
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 20 cctccgtcctaaaataagtgacgtggatttgta 52
||||||||| ||||||||||||||||||||||
Sbjct: 10 cctccgtcccgaaataagtgacgtggatttgta 42
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 aaataagtgacgtggatttgta 52
||||||||||||||||||||||
Sbjct: 50 aaataagtgacgtggatttgta 71
>RF00906;MIR1122;EU730899.1/86003-86096 15368:Brachypodium
distachyon
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 20 cctccgtcctaaaataagtgacgtggatttgta 52
||||||||| ||||||||||| |||||||||||
Sbjct: 85 cctccgtcccaaaataagtgatgtggatttgta 53
>RF00906;MIR1122;AP004224.3/123495-123660 39947:Oryza sativa
Japonica Group
Length = 166
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 attgtgaaacggagggagtagtat 90
||||||||||||||||||||||||
Sbjct: 143 attgtgaaacggagggagtagtat 166
>RF00906;MIR1122;AC145396.3/45626-45471 39947:Oryza sativa Japonica
Group
Length = 156
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 tattgtgaaacggagggagtagta 89
||||||||||||||||||||||||
Sbjct: 132 tattgtgaaacggagggagtagta 155
>RF00906;MIR1122;CR855219.1/67862-67748 4530:Oryza sativa (rice)
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 attgtgaaacggagggagtagtat 90
||||||||||||||||||||||||
Sbjct: 92 attgtgaaacggagggagtagtat 115
>RF00906;MIR1122;AAAA02018733.1/10980-10861 39946:Oryza sativa
Indica Group
Length = 120
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 67 attgtgaaacggagggagtagta 89
|||||||||||||||||||||||
Sbjct: 24 attgtgaaacggagggagtagta 2
>RF00906;MIR1122;FJ581044.1/8310-8181 4538:Oryza glaberrima (African
rice)
Length = 130
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 attgtgaaacggagggagtagta 89
|||||||||||||||||||||||
Sbjct: 107 attgtgaaacggagggagtagta 129
>RF00906;MIR1122;AACV01021520.1/23851-23690 39947:Oryza sativa
Japonica Group
Length = 162
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 attgtgaaacggagggagtagta 89
|||||||||||||||||||||||
Sbjct: 139 attgtgaaacggagggagtagta 161
>RF00906;MIR1122;AAAA02014011.1/23143-23002 39946:Oryza sativa
Indica Group
Length = 142
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 67 attgtgaaacggagggagtagta 89
|||||||||||||||||||||||
Sbjct: 24 attgtgaaacggagggagtagta 2
>RF00906;MIR1122;CR855182.1/16479-16369 4530:Oryza sativa (rice)
Length = 111
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 67 attgtgaaacggagggagtagta 89
|||||||||||||||||||||||
Sbjct: 24 attgtgaaacggagggagtagta 2
>RF00906;MIR1122;AP005879.3/69009-69170 39947:Oryza sativa Japonica
Group
Length = 162
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 tattgtgaaacggagggagtagt 88
|||||||||||||||||||||||
Sbjct: 138 tattgtgaaacggagggagtagt 160
>RF00906;MIR1122;AP003491.3/121978-121836 39947:Oryza sativa
Japonica Group
Length = 143
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 attgtgaaacggagggagtagta 89
|||||||||||||||||||||||
Sbjct: 120 attgtgaaacggagggagtagta 142
>RF00906;MIR1122;AAAA02020840.1/4681-4804 39946:Oryza sativa Indica
Group
Length = 124
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 attgtgaaacggagggagtagta 89
|||||||||||||||||||||||
Sbjct: 101 attgtgaaacggagggagtagta 123
>RF00906;MIR1122;AL731751.4/92313-92451 4530:Oryza sativa (rice)
Length = 139
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 66 tattgtgaaacggagggagtagt 88
|||||||||||||||||||||||
Sbjct: 25 tattgtgaaacggagggagtagt 3
>RF00906;MIR1122;AACV01011709.1/17498-17659 39947:Oryza sativa
Japonica Group
Length = 162
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 67 attgtgaaacggagggagtagta 89
|||||||||||||||||||||||
Sbjct: 24 attgtgaaacggagggagtagta 2
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 attgtgaaacggagggagtagt 88
||||||||||||||||||||||
Sbjct: 139 attgtgaaacggagggagtagt 160
>RF00906;MIR1122;AP003211.3/16612-16773 39947:Oryza sativa
Japonica Group
Length = 162
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 67 attgtgaaacggagggagtagta 89
|||||||||||||||||||||||
Sbjct: 24 attgtgaaacggagggagtagta 2
>RF00906;MIR1122;AP006756.2/89933-90079 39947:Oryza sativa Japonica
Group
Length = 147
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 attgtgaaacggagggagtagt 88
||||||||||||||||||||||
Sbjct: 124 attgtgaaacggagggagtagt 145
>RF00906;MIR1122;AP004132.3/69953-70114 39947:Oryza sativa Japonica
Group
Length = 162
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 attgtgaaacggagggagtagt 88
||||||||||||||||||||||
Sbjct: 139 attgtgaaacggagggagtagt 160
>RF00906;MIR1122;AC108755.2/71660-71514 39947:Oryza sativa
Japonica Group
Length = 147
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 67 attgtgaaacggagggagtagt 88
||||||||||||||||||||||
Sbjct: 24 attgtgaaacggagggagtagt 3
>RF00906;MIR1122;AP005473.4/59321-59460 39947:Oryza sativa Japonica
Group
Length = 140
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 tattgtgaaacggagggagtag 87
||||||||||||||||||||||
Sbjct: 116 tattgtgaaacggagggagtag 137
>RF00906;MIR1122;AP008213.1/2356452-2356313 39947:Oryza sativa
Japonica Group
Length = 140
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 66 tattgtgaaacggagggagtag 87
||||||||||||||||||||||
Sbjct: 25 tattgtgaaacggagggagtag 4
>RF00906;MIR1122;AAAA02042348.1/276-116 39946:Oryza sativa Indica
Group
Length = 161
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 attgtgaaacggagggagtagt 88
||||||||||||||||||||||
Sbjct: 138 attgtgaaacggagggagtagt 159
>RF00906;MIR1122;AP003368.2/55944-55807 39947:Oryza sativa
Japonica Group
Length = 138
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 67 attgtgaaacggagggagtagt 88
||||||||||||||||||||||
Sbjct: 24 attgtgaaacggagggagtagt 3
>RF00906;MIR1122;AACV01014958.1/7523-7680 39947:Oryza sativa
Japonica Group
Length = 158
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 tattgtgaaacggagggagtag 87
||||||||||||||||||||||
Sbjct: 134 tattgtgaaacggagggagtag 155
>RF00906;MIR1122;AP005701.3/56841-57000 39947:Oryza sativa Japonica
Group
Length = 160
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 tattgtgaaacggagggagtag 87
||||||||||||||||||||||
Sbjct: 136 tattgtgaaacggagggagtag 157
>RF00906;MIR1122;AP005295.3/50213-50374 39947:Oryza sativa Japonica
Group
Length = 162
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 attgtgaaacggagggagtagt 88
||||||||||||||||||||||
Sbjct: 139 attgtgaaacggagggagtagt 160
