miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;ABRQ01065900.1/2710-2791 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 143 bits (72), Expect = 4e-34
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 ctgaggagcagggcttagctgcttgtgagcagggtccacaccaagttgtgttcacagtgg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5 ctgaggagcagggcttagctgcttgtgagcagggtccacaccaagtcgtgttcacagtgg 64
Query: 61 ctaagttccgcccccc 76
||||||||||||||||
Sbjct: 65 ctaagttccgcccccc 80
>RF00644;mir-27;AAPY01721327.1/686-605 37347:Tupaia belangeri
(northern tree shrew)
Length = 82
Score = 103 bits (52), Expect = 3e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 1 ctgaggagcagggcttagctgcttgtgagcagggtccacaccaagttgtgttcacagtgg 60
|||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct: 5 ctgaggagcagggcttagctgcttgtgagcagcgtccacaccaagctgtgctcacagtgg 64
Query: 61 ctaagttc 68
||| ||||
Sbjct: 65 ctacgttc 72
>RF00644;mir-27;AANN01357153.1/1239-1159 9365:Erinaceus europaeus
(western European hedgehog)
Length = 81
Score = 71.9 bits (36), Expect = 1e-12
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 5 ggagcagggcttagctgcttgtgagcagggtccacaccaagttgtgttcacagtggctaa 64
||||||||||||||||||| |||| |||||| |||| ||| ||||||||||||||||
Sbjct: 9 ggagcagggcttagctgctggtgaacagggtgt-caccgagtcttgttcacagtggctaa 67
Query: 65 gttccgcccccc 76
||||||||||||
Sbjct: 68 gttccgcccccc 79
>RF00644;mir-27;AAFR03052006.1/45216-45298 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 63.9 bits (32), Expect = 3e-10
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 2 tgaggagcagggcttagctgc-ttgtgagcagggtccacaccaagttgtgttcacagtgg 60
||||||||||| ||||||||| |||||| ||| ||| || || |||||||||||||||
Sbjct: 6 tgaggagcaggacttagctgccttgtgaacagagtcagcatcatattgtgttcacagtgg 65
Query: 61 ctaagttccgcccccc 76
||||||||||| ||||
Sbjct: 66 ctaagttccgctcccc 81
>RF00644;mir-27;ABRO01400204.1/542-621 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 64/74 (86%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 3 gaggagcagggcttagctgcttgtgagcagggtccacaccaagttgtgttcacagtggct 62
||||||||||||||||| |||||||||||||| ||| || ||||||||||||||
Sbjct: 7 gaggagcagggcttagccacttgtgagcagggtttctacc--gtgatgttcacagtggct 64
Query: 63 aagttccgcccccc 76
||||||||||||||
Sbjct: 65 aagttccgcccccc 78
>RF00644;mir-27;AAPN01322484.1/470-549 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 gtgttcacagtggctaagttccgcccc 74
|||||||||||||||||||||||||||
Sbjct: 50 gtgttcacagtggctaagttccgcccc 76
>RF00644;mir-27;CAAB01002712.1/1229-1146 31033:Takifugu rubripes
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 tgtgttcacagtggctaagttccgc 71
|||||||||||||||||||||||||
Sbjct: 53 tgtgttcacagtggctaagttccgc 77
>RF00644;mir-27;ABPM01053951.1/750-668 106582:Maylandia zebra
(zebra mbuna)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 tgtgttcacagtggctaagttccgc 71
|||||||||||||||||||||||||
Sbjct: 52 tgtgttcacagtggctaagttccgc 76
>RF00644;mir-27;AANH01005378.1/81241-81159 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 tgtgttcacagtggctaagttccgc 71
|||||||||||||||||||||||||
Sbjct: 52 tgtgttcacagtggctaagttccgc 76
>RF00644;mir-27;BAAE01159437.1/1557-1475 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 gtgttcacagtggctaagttccgc 71
||||||||||||||||||||||||
Sbjct: 53 gtgttcacagtggctaagttccgc 76
>RF00644;mir-27;AAWZ01000886.1/15608-15527 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tgttcacagtggctaagttccgc 71
|||||||||||||||||||||||
Sbjct: 53 tgttcacagtggctaagttccgc 75
>RF00644;mir-27;BX664751.9/57144-57062 7955:Danio rerio
(zebrafish)
Length = 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tgttcacagtggctaagttccgc 71
|||||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttccgc 76
>RF00644;mir-27;AAVX01257813.1/610-525 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tgttcacagtggctaagttccgc 71
|||||||||||||||||||||||
Sbjct: 57 tgttcacagtggctaagttccgc 79
