miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AAKN02045137.1/14420-14354 10141:Cavia porcellus
(domestic guinea pig)
Length = 67
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 ggtgcagtgcctcggcagtgcagcccgg 73
||||||||||||||||||||||||||||
Sbjct: 40 ggtgcagtgcctcggcagtgcagcccgg 67
>RF00667;mir-33;AAYZ01315512.1/404-338 9978:Ochotona princeps
(American pika)
Length = 67
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 ggtgcagtgcctcggcagtgcagcccgg 73
||||||||||||||||||||||||||||
Sbjct: 40 ggtgcagtgcctcggcagtgcagcccgg 67
>RF00667;mir-33;AAQQ01305246.1/1096-1158 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 63
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 ggtgcagtgcctcggcagtgcagcccgg 73
||||||||||||| ||||||||||||||
Sbjct: 36 ggtgcagtgcctcagcagtgcagcccgg 63
>RF00667;mir-33;AAIY01371081.1/711-777 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 67
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 ggtgcagtgcctcggcagtgcagcccgg 73
|||||||||| |||||||||||||||||
Sbjct: 40 ggtgcagtgcttcggcagtgcagcccgg 67
>RF00667;mir-33;AAGU02562745.1/2088-2024 9785:Loxodonta africana
(African savanna elephant)
Length = 65
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 ggtgcagtgcctcggcagtgcagcccgg 73
||||||||||||| ||||||||||||||
Sbjct: 38 ggtgcagtgcctcagcagtgcagcccgg 65
