miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;ABVD01341709.1/1775-1696 9358:Choloepus hoffmanni
          (Hoffmann's two-fingered sloth)
          Length = 80

 Score =  137 bits (69), Expect = 2e-32
 Identities = 75/77 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
          ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2  agtctggttactaggcagtgtagttagctgattgctattagtaccaatcactaaccacac 61

                           
Query: 61 ggccaggtaaaaagatt 77
          |||||||||||||||||
Sbjct: 62 ggccaggtaaaaagatt 78




>RF00456;mir-34;ABRQ01219522.1/667-588 9813:Procavia capensis
          (cape rock hyrax)
          Length = 80

 Score =  129 bits (65), Expect = 5e-30
 Identities = 74/77 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
          ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  agtctggttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 61

                           
Query: 61 ggccaggtaaaaagatt 77
           |||||||||| |||||
Sbjct: 62 agccaggtaaagagatt 78




>RF00456;mir-34;ABRO01055556.1/2540-2461 10020:Dipodomys ordii
          (Ord's kangaroo rat)
          Length = 80

 Score =  125 bits (63), Expect = 8e-29
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
          |||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||
Sbjct: 2  agtctagttactaggcagtgtagttagctgattgctgaccgtaccaatcactaaccacac 61

                         
Query: 61 ggccaggtaaaaaga 75
          |||||||||||||||
Sbjct: 62 ggccaggtaaaaaga 76




>RF00456;mir-34;AAPN01276489.1/4603-4524 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 80

 Score =  109 bits (55), Expect = 5e-24
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
          ||||||||||||||||||||||||||||||||||||| ||  ||||||||||| ||||||
Sbjct: 2  agtctagttactaggcagtgtagttagctgattgctattaacaccaatcactagccacac 61

                         
Query: 61 ggccaggtaaaaaga 75
           ||||||||||||||
Sbjct: 62 agccaggtaaaaaga 76




>RF00456;mir-34;AADN02058045.1/6075-5997 9031:Gallus gallus
          (chicken)
          Length = 79

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                      
Query: 7  gttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccag 66
          ||||| ||||||||||||||||||||||| |  || |||||||||||||||||| |||||
Sbjct: 7  gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66

                  
Query: 67 gtaaaaag 74
          ||||||||
Sbjct: 67 gtaaaaag 74




>RF00456;mir-34;ABQF01045704.1/20460-20539 59729:Taeniopygia
          guttata
          Length = 80

 Score = 75.8 bits (38), Expect = 7e-14
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                      
Query: 13 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccaggtaaaa 72
          |||||||||||||||||||||||  | || | ||||||||| ||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattgcccaaagcaacaatcactagccacacggccaggtaaaa 73

            
Query: 73 ag 74
          ||
Sbjct: 74 ag 75




>RF00456;mir-34;AAPN01276489.1/6299-6216 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 84

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 taggcagtgtagttagctgattg 34
          |||||||||||||||||||||||
Sbjct: 13 taggcagtgtagttagctgattg 35




>RF00456;mir-34;ABQO011207158.1/502-419 9315:Macropus eugenii
          (tammar wallaby)
          Length = 84

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 taggcagtgtagttagctgattg 34
          |||||||||||||||||||||||
Sbjct: 13 taggcagtgtagttagctgattg 35




>RF00456;mir-34;AAWZ01034188.1/4744-4661 28377:Anolis carolinensis
          (green anole)
          Length = 84

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 taggcagtgtagttagctgattg 34
          |||||||||||||||||||||||
Sbjct: 13 taggcagtgtagttagctgattg 35




>RF00456;mir-34;AAWZ01034188.1/3307-3229 28377:Anolis carolinensis
          (green anole)
          Length = 79

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 13 aggcagtgtagttagctgattg 34
          ||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35




>RF00456;mir-34;ABQF01045704.1/19863-19946 59729:Taeniopygia
          guttata
          Length = 84

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 13 aggcagtgtagttagctgattg 34
          ||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35




>RF00456;mir-34;AADN02058045.1/6812-6729 9031:Gallus gallus
          (chicken)
          Length = 84

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 13 aggcagtgtagttagctgattg 34
          ||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35