miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28288_ggo-mir-93:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
Query: 61 agcacttcccgagcccccgg 80
||||||||||||||||||||
Sbjct: 61 agcacttcccgagcccccgg 80
>30075_ppa-mir-93:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
Query: 61 agcacttcccgagcccccgg 80
||||||||||||||||||||
Sbjct: 61 agcacttcccgagcccccgg 80
>30192_ptr-mir-93:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
Query: 61 agcacttcccgagcccccgg 80
||||||||||||||||||||
Sbjct: 61 agcacttcccgagcccccgg 80
>27499_age-mir-93:mirbase
Length = 80
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagct 60
Query: 61 agcacttcccgagcccccgg 80
||||||||||||||||||||
Sbjct: 61 agcacttcccgagcccccgg 80
>27607_sla-mir-93:mirbase
Length = 80
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccaacctactgctgagct 60
Query: 61 agcacttcccgagcccccgg 80
||||||||||||||||||||
Sbjct: 61 agcacttcccgagcccccgg 80
>28408_hsa-mir-93:mirbase
Length = 80
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccaacctactgctgagct 60
Query: 61 agcacttcccgagcccccgg 80
||||||||||||||||||||
Sbjct: 61 agcacttcccgagcccccgg 80
>27698_mml-mir-93:mirbase
Length = 80
Score = 147 bits (74), Expect = 1e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattaaccgacctactgctgagct 60
Query: 61 agcacttcccgagccccc 78
||||||||||||||||||
Sbjct: 61 agcacttcccgagccccc 78
>28199_mne-mir-93:mirbase
Length = 80
Score = 147 bits (74), Expect = 1e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattaaccgacctactgctgagct 60
Query: 61 agcacttcccgagccccc 78
||||||||||||||||||
Sbjct: 61 agcacttcccgagccccc 78
>27560_lla-mir-93:mirbase
Length = 80
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 4 ggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagctagc 63
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4 ggggctccaaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagc 63
Query: 64 acttcccgagcccccgg 80
|||||||||||||||||
Sbjct: 64 acttcccgagcccccgg 80
>31822_mmu-mir-93:mirbase
Length = 88
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 2 tgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagcta 61
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 6 tgggggctccaaagtgctgttcgtgcaggtagtgtaattacctgacctactgctgagcta 65
Query: 62 gcacttcccgagccccc 78
|||||||||||||||||
Sbjct: 66 gcacttcccgagccccc 82
>33181_bta-mir-93:mirbase
Length = 77
Score = 129 bits (65), Expect = 3e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagcc 60
Query: 61 agcacttcccgagcccc 77
|||||||||||||||||
Sbjct: 61 agcacttcccgagcccc 77
>27362_mdo-mir-93:mirbase
Length = 89
Score = 125 bits (63), Expect = 5e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 3 gggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagctag 62
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 8 gggggctccaaagtgctgttcgtgcaggtagtgtgataacctgacctactgctgagctag 67
Query: 63 cacttcccgagcccc 77
||||||| |||||||
Sbjct: 68 cacttccagagcccc 82
>26669_cfa-mir-93:mirbase
Length = 61
Score = 113 bits (57), Expect = 2e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 11 caaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagctagcacttccc 70
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 60
Query: 71 g 71
|
Sbjct: 61 g 61
>32703_rno-mir-93:mirbase
Length = 87
Score = 113 bits (57), Expect = 2e-26
Identities = 73/77 (94%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 2 tgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagcta 61
|||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct: 6 tgggggctccaaagtgctgttcgtgcaggtagtg-cattgcctgacctactgctgagcta 64
Query: 62 gcacttcccgagccccc 78
|||||||||||||||||
Sbjct: 65 gcacttcccgagccccc 81
>26991_eca-mir-93:mirbase
Length = 59
Score = 109 bits (55), Expect = 3e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 11 caaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagctagcacttcc 69
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttcc 59
>25750_xtr-mir-93a:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gggctccaaagtgctgttcgtgcaggtag 33
||||| |||||||||||||||||||||||
Sbjct: 3 gggcttcaaagtgctgttcgtgcaggtag 31
>34259_dre-mir-93:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 aaagtgctgttcgtgcaggtagtgtg 37
||||||||||| ||||||||||||||
Sbjct: 11 aaagtgctgtttgtgcaggtagtgtg 36
>25751_xtr-mir-93b:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 aagtgctgttcgtgcaggtag 33
|||||||||||||||||||||
Sbjct: 5 aagtgctgttcgtgcaggtag 25
