miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AAHY01129304.1/5145-5216 10090:Mus musculus (house
mouse)
Length = 72
Score = 105 bits (53), Expect = 8e-23
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 9 cataaacccgtagatccgatcttgtggtaaagtggaccgcacaagctcgcttctatgggt 68
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct: 4 cataaacccgtagatccgatcttgtggtgaagtggaccgcgcaagctcgtttctatgggt 63
Query: 69 ctgtg 73
|||||
Sbjct: 64 ctgtg 68
>RF00104;mir-10;AADN02042927.1/15251-15322 9031:Gallus gallus
(chicken)
Length = 72
Score = 103 bits (52), Expect = 3e-22
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 6 tggcataaacccgtagatccgatcttgtggtaaagtggaccgcacaagctcgcttctatg 65
||||||||||||||||||||||||||||| | || || || |||||||||||||||||||
Sbjct: 1 tggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttctatg 60
Query: 66 ggtctgtgtcag 77
||||||||||||
Sbjct: 61 ggtctgtgtcag 72
>RF00104;mir-10;ABQO010319844.1/337-408 9315:Macropus eugenii
(tammar wallaby)
Length = 72
Score = 75.8 bits (38), Expect = 7e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtggtaaagtggaccgcacaagctcgcttctatgggtctg 71
||||||||||||||||||||||||| || | ||| ||||||||||| ||| ||||||||
Sbjct: 7 aaacccgtagatccgatcttgtggtgaaattgacttcacaagctcgcctctttgggtctg 66
Query: 72 tgtcag 77
||||||
Sbjct: 67 tgtcag 72
>RF00104;mir-10;BAAF04093499.1/4658-4587 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 6 tggcataaacccgtagatccgatcttgtggtaaagtggaccgcacaagctcgcttctatg 65
||||| |||||||||||||||||||||||| ||| ||| |||||||||||| ||| ||
Sbjct: 1 tggcacaaacccgtagatccgatcttgtggaaaatctgacggcacaagctcgcctctgtg 60
Query: 66 ggtctgtgtcag 77
||||| ||||||
Sbjct: 61 ggtctctgtcag 72
>RF00104;mir-10;CR936972.7/90514-90443 7955:Danio rerio
(zebrafish)
Length = 72
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 13 aacccgtagatccgatcttgtggtaaagtggaccgcacaagctcgcttctatgggtctgt 72
|||||||||||||||||||||| ||| | || ||||||||||| |||||||||||| |
Sbjct: 8 aacccgtagatccgatcttgtgataagtttgatggcacaagctcgattctatgggtctct 67
Query: 73 gtc 75
|||
Sbjct: 68 gtc 70
>RF00104;mir-10;CAAK05023112.1/859-788 7955:Danio rerio
(zebrafish)
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtgg 35
||||||||||||||||||||||||
Sbjct: 7 aaacccgtagatccgatcttgtgg 30
>RF00104;mir-10;AANU01118946.1/11450-11381 9544:Macaca mulatta
(rhesus monkey)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtggta 37
|||||||||||||||| |||||||||
Sbjct: 7 aaacccgtagatccgaacttgtggta 32
>RF00104;mir-10;ABEP02005607.1/34557-34626 7739:Branchiostoma
floridae (Florida lancelet)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 cataaacccgtagatccgatcttgtg 34
||||||||||||||||||| ||||||
Sbjct: 4 cataaacccgtagatccgaacttgtg 29
