miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00253;mir-101;AADN02012457.1/2688-2762 9031:Gallus gallus
(chicken)
Length = 75
Score = 133 bits (67), Expect = 3e-31
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 1 tgccctggctcagttatcacagtgctgatgctgtctattctaaaggtacagtactgtgat 60
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1 tgccctggctcagttatcacagtgctgatgctgtctcttgtaaaggtacagtactgtgat 60
Query: 61 aactgaaggatggca 75
|||||||||||||||
Sbjct: 61 aactgaaggatggca 75
>RF00253;mir-101;BAAF04077052.1/5406-5332 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 83.8 bits (42), Expect = 3e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 1 tgccctggctcagttatcacagtgctgatgctgtctattctaaaggtacagtactgtgat 60
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tgccctggttcagttatcacagtgctgatgctgtccccatagaaggtacagtactgtgat 60
Query: 61 aactgaaggatggc 74
||||||||||||||
Sbjct: 61 aactgaaggatggc 74
>RF00253;mir-101;AADN02066347.1/1501-1427 9031:Gallus gallus
(chicken)
Length = 75
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 42 aaaggtacagtactgtgataactgaaggatgg 73
||||||||||||||||||||||||||| ||||
Sbjct: 42 aaaggtacagtactgtgataactgaagaatgg 73
>RF00253;mir-101;AC120147.8/122464-122390 10090:Mus musculus
(house mouse)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 42 aaaggtacagtactgtgataactgaaggatggc 74
|||||||||||||||||||| |||||| |||||
Sbjct: 42 aaaggtacagtactgtgatagctgaagaatggc 74
>RF00253;mir-101;AAVX01090491.1/533-606 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 46.1 bits (23), Expect = 6e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 10 tcagttatcacagtgctgatgctgtctattctaaaggtacagtactgtgataactgaag 68
|||||||||||||| | | |||||| | ||| | |||||||||||||||||| ||||||
Sbjct: 10 tcagttatcacagtaccggtgctgttt-ttcaagaggtacagtactgtgatagctgaag 67
