miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 137 bits (69), Expect = 2e-32
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 3 ctgccctcggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacag 62
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ctgccttcggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacag 62
Query: 63 ggctatgaaggca 75
|||||||||||||
Sbjct: 63 ggctatgaaggca 75
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 119 bits (60), Expect = 5e-27
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 3 ctgccctcggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacag 62
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3 ctgccctcggcttctctacagtgctgccttgttgcatgtggatcaagcagcattgtacag 62
Query: 63 ggctatga 70
||||||||
Sbjct: 63 ggctatga 70
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 87.7 bits (44), Expect = 2e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 12 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatgaa 71
||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgacttgtagcatccggatcaagcagcattgtacagggctatgaa 71
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 4 tgccctcggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagg 63
|||| |||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 4 tgccttcggcttctttacagtgctgccttgtgacgtgaagatcaagcagcattgtacagg 63
Query: 64 gctatgaaggca 75
||||||||||||
Sbjct: 64 gctatgaaggca 75
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 79.8 bits (40), Expect = 5e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 12 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatgaa 71
||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggctatgaa 71
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 79.8 bits (40), Expect = 5e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 15 tctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatga 70
||||||| |||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 15 tctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 79.8 bits (40), Expect = 5e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 15 tctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatgaaggc 74
||||||| |||||||||||| || | | ||||||||||||||||||||||||||||||||
Sbjct: 15 tctttacggtgctgccttgtggcgtctcgatcaagcagcattgtacagggctatgaaggc 74
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 73.8 bits (37), Expect = 3e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 12 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 68
|||||||||||||| |||||||| |||| ||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgttgccttgtggcatggcgatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 71.9 bits (36), Expect = 1e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 12 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatgaa 71
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacagggctatgaa 71
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 69.9 bits (35), Expect = 4e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 24 tgctgccttgttgcatatggatcaagcagcattgtacagggctatgaaggc 74
||||||||||| || | | ||||||||||||||||||||||||||||||||
Sbjct: 24 tgctgccttgtggcgtcttgatcaagcagcattgtacagggctatgaaggc 74
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 11 ggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 68
||||||||||||||| |||||||| || | ||||||||||||||||||||||||||
Sbjct: 11 ggcttctttacagtgttgccttgtagcttggagatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 65.9 bits (33), Expect = 7e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 12 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 68
|||||||||||||| |||||||| |||| | ||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 68
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 63.9 bits (32), Expect = 3e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 15 tctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatga 70
|||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 15 tctttacagtgctgccttgtctgatcaggttcaagcagcattgtacagggctatga 70
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 atcaagcagcattgtacagggctatgaa 71
||||||||||||||||||||||||||||
Sbjct: 44 atcaagcagcattgtacagggctatgaa 71
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 56.0 bits (28), Expect = 7e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 11 ggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggct 66
||||||| ||||||| |||||||| || | ||||||||||||||||||||||||
Sbjct: 11 ggcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 66
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 tcaagcagcattgtacagggctatga 70
||||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctatga 70
