miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28440_hsa-mir-129-2:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
Query: 61 ccttaccccaaaaagcatttgcggagggcg 90
||||||||||||||||||||||||||||||
Sbjct: 61 ccttaccccaaaaagcatttgcggagggcg 90
>28441_hsa-mir-129-2:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
Query: 61 ccttaccccaaaaagcatttgcggagggcg 90
||||||||||||||||||||||||||||||
Sbjct: 61 ccttaccccaaaaagcatttgcggagggcg 90
>30217_ptr-mir-129-2:mirbase
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 2 gcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcc 60
Query: 62 cttaccccaaaaagcatttgcggagggcg 90
|||||||||||||||||||||||||||||
Sbjct: 61 cttaccccaaaaagcatttgcggagggcg 89
>32730_rno-mir-129-2:mirbase
Length = 97
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 64
Query: 61 ccttaccccaaaaagcatttgcggagggcg 90
||||||||||||||||||| ||||||||||
Sbjct: 65 ccttaccccaaaaagcattcgcggagggcg 94
>33209_bta-mir-129-2:mirbase
Length = 94
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 61
Query: 61 ccttaccccaaaaagcatttgcggagggcg 90
||||||||||||||||||| ||||||||||
Sbjct: 62 ccttaccccaaaaagcattcgcggagggcg 91
>33210_bta-mir-129-2:mirbase
Length = 94
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 61
Query: 61 ccttaccccaaaaagcatttgcggagggcg 90
||||||||||||||||||| ||||||||||
Sbjct: 62 ccttaccccaaaaagcattcgcggagggcg 91
>27727_mml-mir-129-2:mirbase
Length = 92
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgcccttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 61
Query: 61 ccttaccccaaaaagcatttgcggagggcg 90
||||||||||||||||||| ||||||||||
Sbjct: 62 ccttaccccaaaaagcattcgcggagggcg 91
>31854_mmu-mir-129-2:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
Query: 61 ccttaccccaaaaagcatttgcggagggcg 90
||||||||||||||||||| ||||||||||
Sbjct: 61 ccttaccccaaaaagcattcgcggagggcg 90
>31855_mmu-mir-129-2:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 tgcccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcctttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagc 60
Query: 61 ccttaccccaaaaagcatttgcggagggcg 90
||||||||||||||||||| ||||||||||
Sbjct: 61 ccttaccccaaaaagcattcgcggagggcg 90
>33977_ssc-mir-129a:mirbase
Length = 80
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 5 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 64
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccctt 60
Query: 65 accccaaaaagcatttgcgg 84
||||||||||||||| ||||
Sbjct: 61 accccaaaaagcattcgcgg 80
>27020_eca-mir-129b:mirbase
Length = 74
Score = 141 bits (71), Expect = 1e-34
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 9 gcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccc 60
Query: 69 caaaaagcatt 79
|||||||||||
Sbjct: 61 caaaaagcatt 71
>27021_eca-mir-129b:mirbase
Length = 74
Score = 141 bits (71), Expect = 1e-34
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 9 gcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccc 60
Query: 69 caaaaagcatt 79
|||||||||||
Sbjct: 61 caaaaagcatt 71
>26697_cfa-mir-129-2:mirbase
Length = 63
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 15 ctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccccaaaaa 74
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgtacataactcgatagccggaagcccttaccccaaaaa 60
Query: 75 gca 77
|||
Sbjct: 61 gca 63
>26458_tgu-mir-129:mirbase
Length = 83
Score = 109 bits (55), Expect = 3e-25
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 5 cttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccct 63
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 60
Query: 64 taccccaaaaagcatttgcggag 86
|||||||||||||||| ||||||
Sbjct: 61 taccccaaaaagcattcgcggag 83
>25770_xtr-mir-129-1:mirbase
Length = 90
Score = 95.6 bits (48), Expect = 5e-21
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 12 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
Query: 71 aaaagcatttgcggagggcg 90
||||||||||||||||||||
Sbjct: 71 aaaagcatttgcggagggcg 90
>34288_dre-mir-129-2:mirbase
Length = 87
Score = 81.8 bits (41), Expect = 8e-17
Identities = 73/82 (89%), Gaps = 5/82 (6%)
Strand = Plus / Plus
Query: 10 cgaatctttttgcggtctgggcttgctgtacataact--caatagccggaagcccttacc 67
||||||||||||||||||||||||||||| | |||| |||| | ||||||||||||
Sbjct: 9 cgaatctttttgcggtctgggcttgctgttctcaactatcaatgg---gaagcccttacc 65
Query: 68 ccaaaaagcatttgcggagggc 89
||||||||||||||||||||||
Sbjct: 66 ccaaaaagcatttgcggagggc 87
>34740_tni-mir-129-1:mirbase
Length = 85
Score = 79.8 bits (40), Expect = 3e-16
Identities = 75/86 (87%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 4 ccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccggaagccct 63
||||| ||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct: 3 ccttcacgaatctttttgcggtctgggcttgctgttctctgctcac---ccggaagccct 59
Query: 64 taccccaaaaagcatttgcggagggc 89
||||||||||||||||||||| ||||
Sbjct: 60 taccccaaaaagcatttgcggggggc 85
>25478_pma-mir-129a:mirbase
Length = 88
Score = 77.8 bits (39), Expect = 1e-15
Identities = 68/74 (91%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 7 tcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagccctta 65
||||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||
Sbjct: 7 tcgcgaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagccctta 63
Query: 66 ccccaaaaagcatt 79
||||||||||||||
Sbjct: 64 ccccaaaaagcatt 77
>34593_fru-mir-129-1:mirbase
Length = 89
Score = 73.8 bits (37), Expect = 2e-14
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 4 ccttcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagccc 62
||||| ||||||||||||||||||||||||||||| | | ||| | | || ||||||
Sbjct: 3 ccttcacgaatctttttgcggtctgggcttgctgttctttactggtaatctgggaagccc 62
Query: 63 ttaccccaaaaagcatttgcggagg 87
|||||||||||||||||||||||||
Sbjct: 63 ttaccccaaaaagcatttgcggagg 87
>34594_fru-mir-129-2:mirbase
Length = 73
Score = 69.9 bits (35), Expect = 3e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 14 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 72
||||||||||||||||||||||||| | ||| || ||||| ||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 64
Query: 73 aag 75
|||
Sbjct: 65 aag 67
>34741_tni-mir-129-2:mirbase
Length = 71
Score = 69.9 bits (35), Expect = 3e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 14 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 72
||||||||||||||||||||||||| | ||| || ||||| ||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 63
Query: 73 aag 75
|||
Sbjct: 64 aag 66
>27379_mdo-mir-129:mirbase
Length = 74
Score = 58.0 bits (29), Expect = 1e-09
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctg-tacataactcaatag-ccggaagcccttacccca 70
||||||||||||||||||||||||| | | ||| ||| ||| | ||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgttccttaaatcagtagtcaggaagcccttacccca 63
Query: 71 aaaag 75
|||||
Sbjct: 64 aaaag 68
>27018_eca-mir-129a:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
>27019_eca-mir-129a:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
>27725_mml-mir-129:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>27726_mml-mir-129:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>28439_hsa-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>30216_ptr-mir-129-1:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 2 atctttttgcggtctgggcttgctgt 27
>30825_ppy-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>31484_oan-mir-129:mirbase
Length = 128
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 28 atctttttgcggtctgggcttgctgt 53
>31852_mmu-mir-129-1:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>31853_mmu-mir-129-1:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>33208_bta-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
>33978_ssc-mir-129b:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 atctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||||
Sbjct: 9 atctttttgcggtctgggcttgctgt 34
>34287_dre-mir-129-1:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 14 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 70
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
Query: 71 aaaag 75
|||||
Sbjct: 72 aaaag 76
>32729_rno-mir-129-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 tctttttgcggtctgggcttgctgt 38
|||||||||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgt 29
>25771_xtr-mir-129-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||
Sbjct: 9 ctttttgcggtctgggcttgctgt 32
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaagcatttgcg 83
||||||||||| ||||||||| |||||||
Sbjct: 51 ggaagcccttatcccaaaaagaatttgcg 79
>26696_cfa-mir-129-1:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctttttgcggtctgggcttgctgt 38
||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgt 24
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 43 ggaagcccttaccccaaaaag 63
