miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27577_lla-mir-143:mirbase
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 gcgcagcgccctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgcagcgccctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtc 60
Query: 61 tgagatgaagcactgtagctcaggaagagagaagttgttctgcagc 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgagatgaagcactgtagctcaggaagagagaagttgttctgcagc 106
>28309_ggo-mir-143:mirbase
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 gcgcagcgccctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgcagcgccctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtc 60
Query: 61 tgagatgaagcactgtagctcaggaagagagaagttgttctgcagc 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgagatgaagcactgtagctcaggaagagagaagttgttctgcagc 106
>28463_hsa-mir-143:mirbase
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 gcgcagcgccctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgcagcgccctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtc 60
Query: 61 tgagatgaagcactgtagctcaggaagagagaagttgttctgcagc 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgagatgaagcactgtagctcaggaagagagaagttgttctgcagc 106
>27748_mml-mir-143:mirbase
Length = 106
Score = 202 bits (102), Expect = 4e-53
Identities = 105/106 (99%)
Strand = Plus / Plus
Query: 1 gcgcagcgccctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgcagcgccgtgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtc 60
Query: 61 tgagatgaagcactgtagctcaggaagagagaagttgttctgcagc 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgagatgaagcactgtagctcaggaagagagaagttgttctgcagc 106
>30098_ppa-mir-143:mirbase
Length = 106
Score = 202 bits (102), Expect = 4e-53
Identities = 105/106 (99%)
Strand = Plus / Plus
Query: 1 gcgcagcgccctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgcagcgccctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtc 60
Query: 61 tgagatgaagcactgtagctcaggaagagagaagttgttctgcagc 106
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 tgagatgaagcactgtagctcaggaagagagaagtttttctgcagc 106
>30235_ptr-mir-143:mirbase
Length = 106
Score = 202 bits (102), Expect = 4e-53
Identities = 105/106 (99%)
Strand = Plus / Plus
Query: 1 gcgcagcgccctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgcagcgccctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtc 60
Query: 61 tgagatgaagcactgtagctcaggaagagagaagttgttctgcagc 106
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 tgagatgaagcactgtagctcaggaagagagaagtttttctgcagc 106
>32749_rno-mir-143:mirbase
Length = 105
Score = 176 bits (89), Expect = 2e-45
Identities = 95/97 (97%)
Strand = Plus / Plus
Query: 10 cctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaa 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaa 68
Query: 70 gcactgtagctcaggaagagagaagttgttctgcagc 106
|||||||||||||||||| |||||| |||||||||||
Sbjct: 69 gcactgtagctcaggaagggagaagatgttctgcagc 105
>33229_bta-mir-143:mirbase
Length = 101
Score = 176 bits (89), Expect = 2e-45
Identities = 95/97 (97%)
Strand = Plus / Plus
Query: 10 cctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaa 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cctgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaa 64
Query: 70 gcactgtagctcaggaagagagaagttgttctgcagc 106
|||||||||||| ||||| ||||||||||||||||||
Sbjct: 65 gcactgtagctcgggaagggagaagttgttctgcagc 101
>31876_mmu-mir-143:mirbase
Length = 63
Score = 125 bits (63), Expect = 7e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 22 cctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 60
Query: 82 agg 84
|||
Sbjct: 61 agg 63
>25792_xtr-mir-143:mirbase
Length = 83
Score = 119 bits (60), Expect = 4e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 12 tgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagc 71
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 tgtctcccagcccaaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagc 60
Query: 72 actgtagctcaggaag 87
|||||||||| |||||
Sbjct: 61 actgtagctcgggaag 76
>27043_eca-mir-143:mirbase
Length = 64
Score = 119 bits (60), Expect = 4e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 25 gaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctcagg 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctcagg 64
>31500_oan-mir-143:mirbase
Length = 90
Score = 119 bits (60), Expect = 4e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 12 tgtctcccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagc 71
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3 tgtctcccagcccaaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagc 62
Query: 72 actgtagctcaggaag 87
|||||||||| |||||
Sbjct: 63 actgtagctcgggaag 78
>33993_ssc-mir-143:mirbase
Length = 80
Score = 119 bits (60), Expect = 4e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 17 cccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgt 76
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
Query: 77 agctcaggaagagaga 92
||||| ||||| ||||
Sbjct: 65 agctcgggaagggaga 80
>33994_ssc-mir-143:mirbase
Length = 80
Score = 119 bits (60), Expect = 4e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 17 cccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgt 76
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
Query: 77 agctcaggaagagaga 92
||||| ||||| ||||
Sbjct: 65 agctcgggaagggaga 80
>26717_cfa-mir-143:mirbase
Length = 55
Score = 109 bits (55), Expect = 4e-25
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 55
>27391_mdo-mir-143:mirbase
Length = 63
Score = 105 bits (53), Expect = 6e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 25 gaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4 gaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagctc 60
>34314_dre-mir-143-1:mirbase
Length = 99
Score = 93.7 bits (47), Expect = 2e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
>34315_dre-mir-143-2:mirbase
Length = 99
Score = 93.7 bits (47), Expect = 2e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
>25494_pma-mir-143:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 gttgggagtctgagatgaagcactgta 77
|||| ||||||||||||||||||||||
Sbjct: 34 gttgagagtctgagatgaagcactgta 60
