miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00691;mir-146;ABBA01063157.1/877-789 9606:Homo sapiens (human)
Length = 89
Score = 131 bits (66), Expect = 1e-30
Identities = 73/74 (98%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagcaaatgccctgtggactca 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8 cctggcactgagaactgaattccataggctgtgagctctagc-aatgccctgtggactca 66
Query: 61 gttctggtgcccgg 74
||||||||||||||
Sbjct: 67 gttctggtgcccgg 80
>RF00691;mir-146;ABRQ01378994.1/1874-1963 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 115 bits (58), Expect = 8e-26
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagcaaatgccctgtggactca 60
|||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 8 cctggccctgagaactgaattccataggctgtgagctctagcaaatgccctaggaactca 67
Query: 61 gttctggtgcccgg 74
||||||||||||||
Sbjct: 68 gttctggtgcccgg 81
>RF00691;mir-146;AAIY01333564.1/1864-1775 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 90
Score = 107 bits (54), Expect = 2e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagcaaatgccctgtggactca 60
|||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 8 cctggctctgagaactgaattccataggctgtgagctctagcaaatgccctaggagctca 67
Query: 61 gttctggtgcccgg 74
||||||||||||||
Sbjct: 68 gttctggtgcccgg 81
>RF00691;mir-146;ABDC01238493.1/6154-6243 30608:Microcebus murinus
(gray mouse lemur)
Length = 90
Score = 101 bits (51), Expect = 1e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagcaaatgccctgtggactca 60
|||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 8 cctggctctgagaactgaattccataggctgtgagctctagtgaatgccctagggactca 67
Query: 61 gttctggtgcc 71
|||||||||||
Sbjct: 68 gttctggtgcc 78
>RF00691;mir-146;AAGU02025916.1/485-574 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 99.6 bits (50), Expect = 5e-21
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagcaaatgccctgtggactca 60
|||||| ||||||||||||||||||||||||||| |||||||| ||||||| | |||||
Sbjct: 8 cctggctctgagaactgaattccataggctgtgaactctagcagatgccctaggaactca 67
Query: 61 gttctggtgcccgg 74
||||||||||||||
Sbjct: 68 gttctggtgcccgg 81
>RF00691;mir-146;AANG01052378.1/2905-2994 9685:Felis catus
(domestic cat)
Length = 90
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagcaaatgccctgtggactca 60
|||||| ||||||||||||||||||||||||| ||||| |||||||| ||| |||||||
Sbjct: 8 cctggctctgagaactgaattccataggctgtaagctcaagcaaatggcctagggactca 67
Query: 61 gttctggtgc 70
||||||||||
Sbjct: 68 gttctggtgc 77
>RF00691;mir-146;AAYZ01153033.1/3261-3350 9978:Ochotona princeps
(American pika)
Length = 90
Score = 85.7 bits (43), Expect = 7e-17
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagcaaatgccctgtggactca 60
|||||| ||||||||||||||| |||||| ||||||||||||| || |||| |||||||
Sbjct: 8 cctggctctgagaactgaattctataggccgtgagctctagcagataccctagggactca 67
Query: 61 gttctggtgcc 71
|||||||||||
Sbjct: 68 gttctggtgcc 78
>RF00691;mir-146;AAEX02015545.1/16918-16829 9615:Canis lupus
familiaris (dog)
Length = 90
Score = 83.8 bits (42), Expect = 3e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagcaaatgccctgtggactca 60
|||||| |||||||||||||||||||||||||||||| |||||| ||| |||||||
Sbjct: 8 cctggctctgagaactgaattccataggctgtgagcttgagcaaacagcctagggactca 67
Query: 61 gttctggtgcccgg 74
||||||||||||||
Sbjct: 68 gttctggtgcccgg 81
>RF00691;mir-146;AAFR03025019.1/59830-59741 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 90
Score = 75.8 bits (38), Expect = 7e-14
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 2 ctggcactgagaactgaattccataggctgtgagctctagcaaatgccct 51
||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 9 ctggctctgagaactgaattccataggctgtgagctcatgcaaatgccct 58
>RF00691;mir-146;AAKN02016522.1/10507-10417 10141:Cavia porcellus
(domestic guinea pig)
Length = 91
Score = 65.9 bits (33), Expect = 6e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 11 agaactgaattccataggctgtgagctctagcaaatgccctgtggactcagttctgg 67
|||||||||||| |||||||||||||| |||||||||| | ||||||||||||||
Sbjct: 18 agaactgaattctgtaggctgtgagctccagcaaatgccttagggactcagttctgg 74
>RF00691;mir-146;ABRQ01105150.1/1426-1514 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 65.9 bits (33), Expect = 6e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 8 ctgagaactgaattccataggctgtgagctctagcaaatgccctgtggactcagttctgg 67
||||||||||||| |||||||| |||||| |||||| || |||| | ||||||||||||
Sbjct: 14 ctgagaactgaatgccataggcagtgagcgctagcagataccctaggaactcagttctgg 73
Query: 68 tgccc 72
|||||
Sbjct: 74 tgccc 78
>RF00691;mir-146;ABRO01069912.1/224-312 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 63.9 bits (32), Expect = 3e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 1 cctggcactgagaactgaattccataggctgtgagctctagcaa 44
|||||| |||||||||||||||||||||| ||||||| ||||||
Sbjct: 8 cctggctctgagaactgaattccataggccgtgagctttagcaa 51
>RF00691;mir-146;AAPN01141106.1/3079-3169 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 3 tggcactgagaactgaattccataggctgtgag 35
|||| ||||||||||||||||||||||||||||
Sbjct: 11 tggctctgagaactgaattccataggctgtgag 43
>RF00691;mir-146;AAWZ01011696.1/200150-200239 28377:Anolis
carolinensis (green anole)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 ctgagaactgaattccataggct 30
|||||||||||||||||||||||
Sbjct: 15 ctgagaactgaattccataggct 37
>RF00691;mir-146;ABQF01027036.1/15002-14913 59729:Taeniopygia
guttata
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tggcactgagaactgaattccataggc 29
|||| ||||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;AADN02030809.1/7252-7342 9031:Gallus gallus
(chicken)
Length = 91
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tgagaactgaattccataggc 29
|||||||||||||||||||||
Sbjct: 16 tgagaactgaattccataggc 36
