miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;AANU01202048.1/11100-11029 9544:Macaca mulatta
(rhesus monkey)
Length = 72
Score = 127 bits (64), Expect = 2e-29
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 aatctaaagaaaacatttctgcacacacaccagactatggaagccagtgtgtggaaatgc 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 aatctaaagaaaacatttctgcacacacaccagactattgaagccagtgtgtggaaatgc 60
Query: 61 ttctgcta 68
||||||||
Sbjct: 61 ttctgcta 68
>RF00693;mir-147;ABDC01001199.1/1794-1723 30608:Microcebus murinus
(gray mouse lemur)
Length = 72
Score = 63.9 bits (32), Expect = 2e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 8 agaaaacatttctgcacacacaccagactatggaagccagtgtgtggaaatgcttctgct 67
||||||| ||||||| ||||| |||||||| ||| ||| ||||||||||||||||||||
Sbjct: 8 agaaaacgtttctgcgcacaccccagactaccgaaaccaatgtgtggaaatgcttctgct 67
>RF00693;mir-147;ABRN01322131.1/5297-5220 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 78
Score = 60.0 bits (30), Expect = 4e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 28 caccagactatggaagccagtgtgtggaaatgcttctg 65
||||||||||| ||| ||||||||||||||||||||||
Sbjct: 34 caccagactattgaaaccagtgtgtggaaatgcttctg 71
>RF00693;mir-147;ABRN01165333.1/9979-9911 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 69
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 36 tatggaagccagtgtgtggaaatgcttctgcta 68
||||||| |||||||||||||||||||||||||
Sbjct: 33 tatggaaaccagtgtgtggaaatgcttctgcta 65
>RF00693;mir-147;AAGV020206622.1/526-457 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 70
Score = 56.0 bits (28), Expect = 6e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 25 acacaccagactatggaagccagtgtgtggaaatgcttctgcta 68
|||||||||||||| ||| |||| ||||| ||||||||||||||
Sbjct: 23 acacaccagactattgaaaccagcgtgtgaaaatgcttctgcta 66
>RF00693;mir-147;AAKN02005203.1/37099-37168 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 54.0 bits (27), Expect = 2e-07
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 3 tctaaagaaaacatttctgcacacacaccagactatggaagccagtgtgtggaaatgctt 62
|||| |||||||||||||||||| || |||||||| ||| |||||||| || ||||||
Sbjct: 3 tctacagaaaacatttctgcacaaac--cagactattgaatccagtgtggggcgatgctt 60
Query: 63 ctgcta 68
||||||
Sbjct: 61 ctgcta 66
>RF00693;mir-147;ABRP01017253.1/4570-4501 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 50.1 bits (25), Expect = 4e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 29 accagactatggaagcca-gtgtgtggaaatgcttctgcta 68
||||||| |||||| ||| ||||||||||||||||||||||
Sbjct: 26 accagaccatggaaaccaagtgtgtggaaatgcttctgcta 66
>RF00693;mir-147;ABRP01288637.1/1022-964 132908:Pteropus vampyrus
(large flying fox)
Length = 59
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 23 acacacaccagactatggaagccag 47
|||||||||||||||||||||||||
Sbjct: 21 acacacaccagactatggaagccag 45
>RF00693;mir-147;ACBE01108147.1/7076-7008 9685:Felis catus
(domestic cat)
Length = 69
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 44 ccagtgtgtggaaatgcttctgcta 68
|||||||||||||||||||||||||
Sbjct: 41 ccagtgtgtggaaatgcttctgcta 65
>RF00693;mir-147;AAPY01498171.1/7435-7366 37347:Tupaia belangeri
(northern tree shrew)
Length = 70
Score = 48.1 bits (24), Expect = 1e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 24 cacacaccagactatggaagccagtgtgtggaaatgcttctgct 67
|||| |||||||| ||||| | | ||||||||||||||||||||
Sbjct: 22 cacaaaccagactttggaaactaatgtgtggaaatgcttctgct 65
>RF00693;mir-147;AACN010573528.1/732-801 9615:Canis lupus
familiaris (dog)
Length = 70
Score = 46.1 bits (23), Expect = 6e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 24 cacacaccagactatggaagccagtgtgtggaaatgctt 62
||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 22 cacacaccagactattgaaatcagcgtgtggaaatgctt 60
>RF00693;mir-147;AAPE01145458.1/4756-4686 59463:Myotis lucifugus
(little brown bat)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 32 agactatggaagccagtgtgtggaaa 57
|||| |||||||||||||||||||||
Sbjct: 30 agacaatggaagccagtgtgtggaaa 55
>RF00693;mir-147;AALT01554324.1/2524-2592 42254:Sorex araneus
(European shrew)
Length = 69
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 ccagtgtgtggaaatgcttctgcta 68
||||||| |||||||||||||||||
Sbjct: 41 ccagtgtatggaaatgcttctgcta 65
>RF00693;mir-147;AAQR01094649.1/6332-6264 30611:Otolemur garnettii
(small-eared galago)
Length = 69
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 ccagtgtgtggaaatgcttctgcta 68
|||||||| ||||||||||||||||
Sbjct: 41 ccagtgtgaggaaatgcttctgcta 65
