miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28470_hsa-mir-147b:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 tataaatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tataaatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaat 60
Query: 61 gcttctgctacatttttagg 80
||||||||||||||||||||
Sbjct: 61 gcttctgctacatttttagg 80
>30241_ptr-mir-147b:mirbase
Length = 79
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 2 ataaatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataaatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatg 60
Query: 62 cttctgctacatttttagg 80
|||||||||||||||||||
Sbjct: 61 cttctgctacatttttagg 79
>27755_mml-mir-147b:mirbase
Length = 80
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 tataaatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaat 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 1 tataaatctagtggaaacatttccgcacaaactagattctggacaccagtgtgcggaagt 60
Query: 61 gcttctgctacatttttagg 80
||||||||| ||||||||||
Sbjct: 61 gcttctgctgcatttttagg 80
>26722_cfa-mir-147:mirbase
Length = 86
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 5 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 64
||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 9 aatctagtggaaacattgctgcacaaactagattatggataccagtgtgcggaaatgctt 68
Query: 65 ctgctacatttttagg 80
||||||||||||||||
Sbjct: 69 ctgctacatttttagg 84
>33234_bta-mir-147:mirbase
Length = 80
Score = 111 bits (56), Expect = 7e-26
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 5 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 64
||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct: 5 aatctagtggaaacacttctgcacaggctagattatggataccagtgtgcggaaatgctt 64
Query: 65 ctgctacatttttagg 80
||||||||||||||||
Sbjct: 65 ctgctacatttttagg 80
>31881_mmu-mir-147:mirbase
Length = 79
Score = 95.6 bits (48), Expect = 4e-21
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 5 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 64
||||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 5 aatctagtggaaacatttctgcacaaactagatgttg-atgccagtgtgcggaaatgctt 63
Query: 65 ctgctacatttttagg 80
||||||||||| ||||
Sbjct: 64 ctgctacatttgtagg 79
>32754_rno-mir-147:mirbase
Length = 79
Score = 95.6 bits (48), Expect = 4e-21
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 5 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 64
||||||||||||||| ||||||||||||| |||| || | |||||||||||||||||||
Sbjct: 5 aatctagtggaaacacttctgcacaaactcgattttg-atgccagtgtgcggaaatgctt 63
Query: 65 ctgctacatttttagg 80
||||||||||||||||
Sbjct: 64 ctgctacatttttagg 79
>27396_mdo-mir-147b:mirbase
Length = 82
Score = 87.7 bits (44), Expect = 1e-18
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 5 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 64
|||||||||||||||| || |||||||||||| | || |||||||||||||| |||||
Sbjct: 7 aatctagtggaaacatctccgcacaaactagactactgaaaccagtgtgcggaagtgctt 66
Query: 65 ctgctacatttttagg 80
||||||||||||||||
Sbjct: 67 ctgctacatttttagg 82
>26478_tgu-mir-147:mirbase
Length = 70
Score = 75.8 bits (38), Expect = 4e-15
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 9 tagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgcttctgc 68
|||||||| |||||||||||||||| || | || | ||||||||||||||||||||||
Sbjct: 1 tagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgc 60
Query: 69 tacattttta 78
||||||||||
Sbjct: 61 tacattttta 70
>27049_eca-mir-147b:mirbase
Length = 80
Score = 71.9 bits (36), Expect = 6e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 21 ttctgcacaaactagattctggacaccagtgtgcggaaatgcttctgctacatttttagg 80
||||||||||||| || | |||| | |||||||| |||||||||||||||||||||||||
Sbjct: 21 ttctgcacaaactggagtatggatatcagtgtgccgaaatgcttctgctacatttttagg 80
>25969_gga-mir-147-1:mirbase
Length = 70
Score = 67.9 bits (34), Expect = 1e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 5 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 64
|||||||||||| || ||||||||||||| || | || | ||||||||||||||||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 65 ctgctacatt 74
||||||||||
Sbjct: 61 ctgctacatt 70
>25970_gga-mir-147-2:mirbase
Length = 70
Score = 67.9 bits (34), Expect = 1e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 5 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 64
|||||||||||| || ||||||||||||| || | || | ||||||||||||||||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 65 ctgctacatt 74
||||||||||
Sbjct: 61 ctgctacatt 70
>27754_mml-mir-147a:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 ccagtgtgcggaaatgcttctgctacatt 74
|||||||| ||||||||||||||||||||
Sbjct: 44 ccagtgtgtggaaatgcttctgctacatt 72
>28217_mne-mir-147:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 ccagtgtgcggaaatgcttctgctacatt 74
|||||||| ||||||||||||||||||||
Sbjct: 44 ccagtgtgtggaaatgcttctgctacatt 72
>27619_sla-mir-147:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 46 ccagtgtgcggaaatgcttctgctacatt 74
|||||||| |||||||||||||| |||||
Sbjct: 44 ccagtgtgtggaaatgcttctgccacatt 72
>28469_hsa-mir-147:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 ccagtgtgcggaaatgcttctgcta 70
|||||||| ||||||||||||||||
Sbjct: 44 ccagtgtgtggaaatgcttctgcta 68
>30100_ppa-mir-147:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 ccagtgtgcggaaatgcttctgcta 70
|||||||| ||||||||||||||||
Sbjct: 44 ccagtgtgtggaaatgcttctgcta 68
>30240_ptr-mir-147a:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 ccagtgtgcggaaatgcttctgcta 70
|||||||| ||||||||||||||||
Sbjct: 44 ccagtgtgtggaaatgcttctgcta 68
>30853_ppy-mir-147:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 ccagtgtgcggaaatgcttctgcta 70
|||||||| ||||||||||||||||
Sbjct: 44 ccagtgtgtggaaatgcttctgcta 68
