miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28312_ggo-mir-154:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
Query: 61 ggttgacctatttttcagtaccaa 84
||||||||||||||||||||||||
Sbjct: 61 ggttgacctatttttcagtaccaa 84
>28481_hsa-mir-154:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
Query: 61 ggttgacctatttttcagtaccaa 84
||||||||||||||||||||||||
Sbjct: 61 ggttgacctatttttcagtaccaa 84
>30101_ppa-mir-154:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
Query: 61 ggttgacctatttttcagtaccaa 84
||||||||||||||||||||||||
Sbjct: 61 ggttgacctatttttcagtaccaa 84
>30249_ptr-mir-154:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
Query: 61 ggttgacctatttttcagtaccaa 84
||||||||||||||||||||||||
Sbjct: 61 ggttgacctatttttcagtaccaa 84
>27765_mml-mir-154:mirbase
Length = 84
Score = 163 bits (82), Expect = 2e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
Query: 63 ttgacctatttttcagtaccaa 84
||||||||||||||||||||||
Sbjct: 63 ttgacctatttttcagtaccaa 84
>28220_mne-mir-154:mirbase
Length = 84
Score = 163 bits (82), Expect = 2e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
Query: 63 ttgacctatttttcagtaccaa 84
||||||||||||||||||||||
Sbjct: 63 ttgacctatttttcagtaccaa 84
>32761_rno-mir-154:mirbase
Length = 84
Score = 147 bits (74), Expect = 1e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 7 cttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttga 66
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cttgaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttga 66
Query: 67 cctatttttcagtaccaa 84
||||||||||||||||||
Sbjct: 67 cctatttttcagtaccaa 84
>33242_bta-mir-154:mirbase
Length = 84
Score = 125 bits (63), Expect = 5e-30
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 6 acttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttg 65
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 6 acttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttc 65
Query: 66 acctatttttcagtaccaa 84
|||||||||| ||||||||
Sbjct: 66 acctattttttagtaccaa 84
>33799_oar-mir-154a:mirbase
Length = 105
Score = 125 bits (63), Expect = 5e-30
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 6 acttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttg 65
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 15 acttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttc 74
Query: 66 acctatttttcagtaccaa 84
|||||||||| ||||||||
Sbjct: 75 acctattttttagtaccaa 93
>33800_oar-mir-154a:mirbase
Length = 105
Score = 125 bits (63), Expect = 5e-30
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 6 acttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttg 65
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 15 acttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttc 74
Query: 66 acctatttttcagtaccaa 84
|||||||||| ||||||||
Sbjct: 75 acctattttttagtaccaa 93
>31890_mmu-mir-154:mirbase
Length = 66
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 10 gaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttgacct 69
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 gaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttgacct 60
Query: 70 attttt 75
||||||
Sbjct: 61 attttt 66
>27058_eca-mir-154:mirbase
Length = 64
Score = 111 bits (56), Expect = 8e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 12 agataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttgacctat 71
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 1 agataggttatccgtgttgccttcgctttatctgtgacgaatcatacacggttcacctat 60
Query: 72 tttt 75
||||
Sbjct: 61 tttt 64
>33801_oar-mir-154b:mirbase
Length = 109
Score = 63.9 bits (32), Expect = 2e-11
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatt-tgtgacgaatcataca 59
|||||||||||||| |||| ||| || ||| ||||||||||| | ||||||||||||||
Sbjct: 12 gtggtacttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcataca 71
Query: 60 cggttgacctattttt 75
||||||||| |||||
Sbjct: 72 tggttgaccttttttt 87
>33802_oar-mir-154b:mirbase
Length = 109
Score = 63.9 bits (32), Expect = 2e-11
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatt-tgtgacgaatcataca 59
|||||||||||||| |||| ||| || ||| ||||||||||| | ||||||||||||||
Sbjct: 12 gtggtacttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcataca 71
Query: 60 cggttgacctattttt 75
||||||||| |||||
Sbjct: 72 tggttgaccttttttt 87
>33399_bta-mir-494:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
||||||||||||||| |||| |||||||| ||| ||| |||||||||
Sbjct: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgg 63
>33092_rno-mir-3592:mirbase
Length = 116
Score = 52.0 bits (26), Expect = 6e-08
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
|||||||||||||| | ||| | |||| || ||||||||| |||||||||||||| |||
Sbjct: 101 gtggtacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcac 42
Query: 61 gg 62
||
Sbjct: 41 gg 40
>26856_cfa-mir-487a:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
|||||||||||| |||||||| || || |||||| ||||| ||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcataca 57
>27192_eca-mir-487a:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
|||||||||||| |||||||| || || |||||| ||||| ||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcataca 57
>28675_hsa-mir-487a:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
|||||||||||| |||||||| || || ||||||| |||| ||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcataca 57
>31023_ppy-mir-487a:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
|||||||||||| |||||||| || || ||||||| |||| ||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcataca 57
>33392_bta-mir-487a:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
|||||||||||| |||||||| || || |||||| ||||| ||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcataca 57
>32898_rno-mir-382:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
|||||||||||| | ||| | |||| || ||||||||| |||||||||||||| |||||
Sbjct: 1 ggtacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacgg 60
>27225_eca-mir-539:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 ttcgctttatttgtgacgaatcataca 59
|||||||||||||||| ||||||||||
Sbjct: 30 ttcgctttatttgtgatgaatcataca 56
>33858_oar-mir-494:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
||||||||||||||| ||| |||||||| ||| ||| |||||||||
Sbjct: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgg 68
>33859_oar-mir-494:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
||||||||||||||| ||| |||||||| ||| ||| |||||||||
Sbjct: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgg 68
>32055_mmu-mir-382:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 33 ttcgctttatttgtgacgaatcatacacgg 62
||||||||| |||||||||||||| |||||
Sbjct: 29 ttcgctttacttgtgacgaatcattcacgg 58
>33788_bta-mir-3578:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
|||||||||||||| | ||| | |||| || ||||||||| || ||||||||||| |||
Sbjct: 85 gtggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcac 26
Query: 61 gg 62
||
Sbjct: 25 gg 24
>33834_oar-mir-382:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
|||||||||||||| | ||| | |||| || ||||||||| || ||||||||||| |||
Sbjct: 29 gtggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcac 88
Query: 61 gg 62
||
Sbjct: 89 gg 90
>33835_oar-mir-382:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacac 60
|||||||||||||| | ||| | |||| || ||||||||| || ||||||||||| |||
Sbjct: 29 gtggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcac 88
Query: 61 gg 62
||
Sbjct: 89 gg 90
>33852_oar-mir-487a:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 2 tggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
||||||||||||| || ||||| || || |||||| ||||| ||||||||||||||
Sbjct: 10 tggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcataca 67
>33853_oar-mir-487a:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 2 tggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
||||||||||||| || ||||| || || |||||| ||||| ||||||||||||||
Sbjct: 10 tggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcataca 67
>26877_cfa-mir-543:mirbase
Length = 58
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttcgctttatttgtgacgaa 52
||||||||||||||||||||
Sbjct: 19 ttcgctttatttgtgacgaa 38
>27229_eca-mir-543:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttcgctttatttgtgacgaa 52
||||||||||||||||||||
Sbjct: 27 ttcgctttatttgtgacgaa 46
>27993_mml-mir-543:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttcgctttatttgtgacgaa 52
||||||||||||||||||||
Sbjct: 31 ttcgctttatttgtgacgaa 50
>28791_hsa-mir-543:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttcgctttatttgtgacgaa 52
||||||||||||||||||||
Sbjct: 29 ttcgctttatttgtgacgaa 48
>30390_ptr-mir-487a:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 4 gtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
||||||||||| |||||||| || || |||||| |||| ||||||||||||||
Sbjct: 1 gtacttgaagagtggttatccctgctgtgttcgctgaatttatgacgaatcataca 56
>30467_ptr-mir-543:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttcgctttatttgtgacgaa 52
||||||||||||||||||||
Sbjct: 28 ttcgctttatttgtgacgaa 47
>31130_ppy-mir-543:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttcgctttatttgtgacgaa 52
||||||||||||||||||||
Sbjct: 29 ttcgctttatttgtgacgaa 48
>27924_mml-mir-487a:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 33 ttcgctttatttgtgacgaatcataca 59
|||||||| ||| ||||||||||||||
Sbjct: 31 ttcgctttgtttatgacgaatcataca 57
>27989_mml-mir-539:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 33 ttcgctttatttgtgacgaatcataca 59
|||||||||||| ||| ||||||||||
Sbjct: 30 ttcgctttatttatgatgaatcataca 56
>28787_hsa-mir-539:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 33 ttcgctttatttgtgacgaatcataca 59
|||||||||||| ||| ||||||||||
Sbjct: 30 ttcgctttatttatgatgaatcataca 56
>30466_ptr-mir-539:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 33 ttcgctttatttgtgacgaatcataca 59
|||||||||||| ||| ||||||||||
Sbjct: 29 ttcgctttatttatgatgaatcataca 55
>31126_ppy-mir-539:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 33 ttcgctttatttgtgacgaatcataca 59
|||||||||||| ||| ||||||||||
Sbjct: 30 ttcgctttatttatgatgaatcataca 56
>33411_bta-mir-539:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 33 ttcgctttatttgtgacgaatcataca 59
||||||||||||| || ||||||||||
Sbjct: 30 ttcgctttatttgggatgaatcataca 56
