miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28489_hsa-mir-182:mirbase
Length = 110
Score = 208 bits (105), Expect = 6e-55
Identities = 108/109 (99%)
Strand = Plus / Plus
Query: 4 agctgcttgccttcccccgtttttggcaatggtagaactcacactggtgaggtaacagga 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agctgcttgcctccccccgtttttggcaatggtagaactcacactggtgaggtaacagga 61
Query: 64 tccggtggttctagacttgccaactatggggcgaggactcagccggcac 112
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tccggtggttctagacttgccaactatggggcgaggactcagccggcac 110
>30257_ptr-mir-182:mirbase
Length = 109
Score = 198 bits (100), Expect = 6e-52
Identities = 106/108 (98%)
Strand = Plus / Plus
Query: 4 agctgcttgccttcccccgtttttggcaatggtagaactcacactggtgaggtaacagga 63
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agctgcttgcctccctccgtttttggcaatggtagaactcacactggtgaggtaacagga 61
Query: 64 tccggtggttctagacttgccaactatggggcgaggactcagccggca 111
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tccggtggttctagacttgccaactatggggcgaggactcagccggca 109
>27773_mml-mir-182:mirbase
Length = 112
Score = 174 bits (88), Expect = 9e-45
Identities = 106/112 (94%)
Strand = Plus / Plus
Query: 1 cacagctgcttgccttcccccgtttttggcaatggtagaactcacactggtgaggtaaca 60
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacagctgcttgcctccccctgtttttggcaatggtagaactcacactggtgaggtaatg 60
Query: 61 ggatccggtggttctagacttgccaactatggggcgaggactcagccggcac 112
||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 61 ggatccggtggttctagacttgccaactacggggcgagggctcagccggcac 112
>26737_cfa-mir-182:mirbase
Length = 92
Score = 143 bits (72), Expect = 3e-35
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 8 gcttgccttcccccgtttttggcaatggtagaactcacactggtgaggtaacaggatccg 67
|||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 gcttgcctcccgccgtttttggcaatggtagaactcacactggtgaggtaatgggatccg 60
Query: 68 gtggttctagacttgccaactatggggcgagg 99
||||||||||||||||||||||||| ||||||
Sbjct: 61 gtggttctagacttgccaactatggtgcgagg 92
>31513_oan-mir-182:mirbase
Length = 100
Score = 133 bits (67), Expect = 3e-32
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 25 tttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagacttgcc 84
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 14 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 73
Query: 85 aactatggggcgaggactcagccggca 111
|||||||| ||||| |||||||||||
Sbjct: 74 aactatggcccgagggctcagccggca 100
>33250_bta-mir-182:mirbase
Length = 111
Score = 129 bits (65), Expect = 5e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 23 tttttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagacttg 82
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 23 tttttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttg 82
Query: 83 ccaactatggggcgagg 99
|||||||||| ||||||
Sbjct: 83 ccaactatggtgcgagg 99
>27063_eca-mir-182:mirbase
Length = 75
Score = 123 bits (62), Expect = 3e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 23 tttttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagacttg 82
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5 tttttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttg 64
Query: 83 ccaactatgg 92
||||||||||
Sbjct: 65 ccaactatgg 74
>34614_fru-mir-182:mirbase
Length = 72
Score = 105 bits (53), Expect = 7e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 25 tttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagacttgcc 84
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3 tttggcaatggtagaactcacactggtgaggtagatggatccggtggttctagacttgcc 62
Query: 85 aacta 89
|||||
Sbjct: 63 aacta 67
>34761_tni-mir-182:mirbase
Length = 67
Score = 105 bits (53), Expect = 7e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 25 tttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagacttgcc 84
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3 tttggcaatggtagaactcacactggtgaggtagatggatccggtggttctagacttgcc 62
Query: 85 aacta 89
|||||
Sbjct: 63 aacta 67
>25807_xtr-mir-182:mirbase
Length = 105
Score = 103 bits (52), Expect = 3e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 25 tttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagacttgcc 84
|||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 20 tttggcaatggtagaactcacactggtgagctatgaagatccggtggttctagacttgcc 79
Query: 85 aactatgg 92
||||||||
Sbjct: 80 aactatgg 87
>31898_mmu-mir-182:mirbase
Length = 75
Score = 99.6 bits (50), Expect = 4e-22
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 23 tttttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagacttg 82
||||||||||||||||||||||||| ||| |||||| ||| ||||||||||||||||||
Sbjct: 5 tttttggcaatggtagaactcacaccggtaaggtaatgggacccggtggttctagacttg 64
Query: 83 ccaactatgg 92
||||||||||
Sbjct: 65 ccaactatgg 74
>27406_mdo-mir-182:mirbase
Length = 71
Score = 97.6 bits (49), Expect = 2e-21
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 25 tttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagacttgcc 84
|||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 7 tttggcaatggtagaactcacactggtgagataatggaatccggtggttctagacttgcc 66
Query: 85 aacta 89
|||||
Sbjct: 67 aacta 71
>34333_dre-mir-182:mirbase
Length = 68
Score = 97.6 bits (49), Expect = 2e-21
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 25 tttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagacttgcc 84
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4 tttggcaatggtagaactcacactggtgaggtagtcagatccggtggttctagacttgcc 63
Query: 85 aacta 89
|||||
Sbjct: 64 aacta 68
>32768_rno-mir-182:mirbase
Length = 62
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 20 ccgtttttggcaatggtagaactcacac 47
||||||||||||||||||||||||||||
Sbjct: 30 ccgtttttggcaatggtagaactcacac 57
>25507_pma-mir-182:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 25 tttggcaatggtagaactcacactgg 50
||||||||||||||||||||||||||
Sbjct: 12 tttggcaatggtagaactcacactgg 37
