miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28317_ggo-mir-183:mirbase
Length = 110
Score = 204 bits (103), Expect = 9e-54
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 1 cagagcgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cagagtgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagt 63
Query: 61 cagtgaattaccgaagggccataaacagagcagagacagatccacga 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cagtgaattaccgaagggccataaacagagcagagacagatccacga 110
>28490_hsa-mir-183:mirbase
Length = 110
Score = 204 bits (103), Expect = 9e-54
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 1 cagagcgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cagagtgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagt 63
Query: 61 cagtgaattaccgaagggccataaacagagcagagacagatccacga 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cagtgaattaccgaagggccataaacagagcagagacagatccacga 110
>30106_ppa-mir-183:mirbase
Length = 110
Score = 204 bits (103), Expect = 9e-54
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 1 cagagcgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cagagtgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagt 63
Query: 61 cagtgaattaccgaagggccataaacagagcagagacagatccacga 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cagtgaattaccgaagggccataaacagagcagagacagatccacga 110
>30258_ptr-mir-183:mirbase
Length = 110
Score = 204 bits (103), Expect = 9e-54
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 1 cagagcgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cagagtgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagt 63
Query: 61 cagtgaattaccgaagggccataaacagagcagagacagatccacga 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cagtgaattaccgaagggccataaacagagcagagacagatccacga 110
>27774_mml-mir-183:mirbase
Length = 110
Score = 196 bits (99), Expect = 2e-51
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 1 cagagcgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagt 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 cagaacgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcggt 63
Query: 61 cagtgaattaccgaagggccataaacagagcagagacagatccacga 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cagtgaattaccgaagggccataaacagagcagagacagatccacga 110
>28224_mne-mir-183:mirbase
Length = 110
Score = 196 bits (99), Expect = 2e-51
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 1 cagagcgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagt 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 cagaacgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcggt 63
Query: 61 cagtgaattaccgaagggccataaacagagcagagacagatccacga 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cagtgaattaccgaagggccataaacagagcagagacagatccacga 110
>27621_sla-mir-183:mirbase
Length = 110
Score = 188 bits (95), Expect = 6e-49
Identities = 101/103 (98%)
Strand = Plus / Plus
Query: 1 cagagcgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagt 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 cagaacgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcggt 63
Query: 61 cagtgaattaccgaagggccataaacagagcagagacagatcc 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cagtgaattaccgaagggccataaacagagcagagacagatcc 106
>32769_rno-mir-183:mirbase
Length = 110
Score = 178 bits (90), Expect = 5e-46
Identities = 99/102 (97%)
Strand = Plus / Plus
Query: 2 agagcgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtc 61
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5 agagtgtgactcctgtcctgtgtatggcactggtagaattcactgtgaacagtctcggtc 64
Query: 62 agtgaattaccgaagggccataaacagagcagagacagatcc 103
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 agtgaattaccgaagggccataaacagagcagagacagatcc 106
>33041_rno-mir-3553:mirbase
Length = 106
Score = 178 bits (90), Expect = 5e-46
Identities = 99/102 (97%)
Strand = Plus / Minus
Query: 2 agagcgtgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtc 61
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 103 agagtgtgactcctgtcctgtgtatggcactggtagaattcactgtgaacagtctcggtc 44
Query: 62 agtgaattaccgaagggccataaacagagcagagacagatcc 103
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 agtgaattaccgaagggccataaacagagcagagacagatcc 2
>31899_mmu-mir-183:mirbase
Length = 70
Score = 139 bits (70), Expect = 5e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 19 ctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaattaccgaaggg 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaattaccgaaggg 60
Query: 79 ccataaacag 88
||||||||||
Sbjct: 61 ccataaacag 70
>33251_bta-mir-183:mirbase
Length = 70
Score = 131 bits (66), Expect = 1e-31
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 19 ctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaattaccgaaggg 78
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaaggg 60
Query: 79 ccataaacag 88
||||||||||
Sbjct: 61 ccataaacag 70
>34013_ssc-mir-183:mirbase
Length = 70
Score = 131 bits (66), Expect = 1e-31
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 19 ctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaattaccgaaggg 78
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaaggg 60
Query: 79 ccataaacag 88
||||||||||
Sbjct: 61 ccataaacag 70
>27064_eca-mir-183:mirbase
Length = 69
Score = 129 bits (65), Expect = 4e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 19 ctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaattaccgaaggg 78
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaaggg 60
Query: 79 ccataaaca 87
|||||||||
Sbjct: 61 ccataaaca 69
>31514_oan-mir-183:mirbase
Length = 131
Score = 119 bits (60), Expect = 4e-28
Identities = 87/96 (90%)
Strand = Plus / Plus
Query: 10 actcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaatt 69
||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||
Sbjct: 17 actcctgttctgtgtatggcactggtagaattcactgtgaaaacacactatcagtgaatt 76
Query: 70 accgaagggccataaacagagcagagacagatccac 105
||| ||||||||||||||||||||||| ||| ||||
Sbjct: 77 accaaagggccataaacagagcagagaaagaaccac 112
>27407_mdo-mir-183:mirbase
Length = 88
Score = 117 bits (59), Expect = 2e-27
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 10 actcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaatt 69
||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||
Sbjct: 1 actcctgttctgtgtatggcactggtagaattcactgtgaaaacacactatcagtgaatt 60
Query: 70 accgaagggccataaacagagcagaga 96
||| |||||||||||||||||||||||
Sbjct: 61 accaaagggccataaacagagcagaga 87
>26738_cfa-mir-183:mirbase
Length = 62
Score = 115 bits (58), Expect = 7e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 24 tatggcactggtagaattcactgtgaacagtctcagtcagtgaattaccgaagggccata 83
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 tatggcactggtagaattcactgtgaacagtctcggtcagtgaattaccgaagggccata 60
Query: 84 aa 85
||
Sbjct: 61 aa 62
>34334_dre-mir-183:mirbase
Length = 98
Score = 115 bits (58), Expect = 7e-27
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 9 gactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaat 68
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 1 gactcctgttctgtgtatggcactggtagaattcactgtgaaagcacactatcagtgaat 60
Query: 69 taccgaagggccataaacagagcagagacagatccacg 106
|||| ||||||||||||||||||||||| ||| |||||
Sbjct: 61 taccaaagggccataaacagagcagagaaagaaccacg 98
>25808_xtr-mir-183:mirbase
Length = 97
Score = 107 bits (54), Expect = 2e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 11 ctcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaatta 70
|||||||||||||||||||||||||||||||||||||||| | | | |||||||||||
Sbjct: 6 ctcctgttctgtgtatggcactggtagaattcactgtgaaaacacaaaatcagtgaatta 65
Query: 71 ccgaagggccataaacagagcagaga 96
|| ||||||||||||||||||||||
Sbjct: 66 ccatagggccataaacagagcagaga 91
>25978_gga-mir-183:mirbase
Length = 98
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 10 actcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaatt 69
||||||||||||||||||||||||||||||||||||||| | | | |||||||||||
Sbjct: 1 actcctgttctgtgtatggcactggtagaattcactgtgcaaccccgcggtcagtgaatt 60
Query: 70 accgaagggccataaacagagcagaga 96
||| ||||||||||||| ||||||||
Sbjct: 61 accatagggccataaacaaagcagaga 87
>34615_fru-mir-183:mirbase
Length = 70
Score = 67.9 bits (34), Expect = 1e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 19 ctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaattaccgaaggg 78
||||||||||||||||||||||||||||||| || | ||||||||||||| ||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgagagctcactatcagtgaattaccataggg 60
Query: 79 ccataaacag 88
||||||||||
Sbjct: 61 ccataaacag 70
>34762_tni-mir-183:mirbase
Length = 70
Score = 67.9 bits (34), Expect = 1e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 19 ctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaattaccgaaggg 78
||||||||||||||||||||||||||||||| || | ||||||||||||| ||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgtgagagctcactatcagtgaattaccataggg 60
Query: 79 ccataaacag 88
||||||||||
Sbjct: 61 ccataaacag 70
>24843_cin-mir-183:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 21 gtgtatggcactggtagaattcactg 46
||||||||||||||||||||||||||
Sbjct: 13 gtgtatggcactggtagaattcactg 38
>25508_pma-mir-183:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 19 ctgtgtatggcactggtagaattcactgt 47
|||| ||||||||||||||||||||||||
Sbjct: 10 ctgtctatggcactggtagaattcactgt 38
>24687_bfl-mir-183:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 tatggcactggtagaattcactg 46
|||||||||||||||||||||||
Sbjct: 21 tatggcactggtagaattcactg 43
>38871_lgi-mir-182:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 26 tggcactggtagaattcactg 46
|||||||||||||||||||||
Sbjct: 23 tggcactggtagaattcactg 43
>38756_cte-mir-182:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 26 tggcactggtagaattcactg 46
|||||||||||||||||||||
Sbjct: 23 tggcactggtagaattcactg 43
>38872_lgi-mir-183:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 atggcactggtagaattcac 44
||||||||||||||||||||
Sbjct: 22 atggcactggtagaattcac 41
