miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28492_hsa-mir-185:mirbase
Length = 82
Score = 163 bits (82), Expect = 2e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 agggggcgagggattggagagaaaggcagttcctgatggtcccctccccaggggctggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggggcgagggattggagagaaaggcagttcctgatggtcccctccccaggggctggct 60
Query: 61 ttcctctggtccttccctccca 82
||||||||||||||||||||||
Sbjct: 61 ttcctctggtccttccctccca 82
>30260_ptr-mir-185:mirbase
Length = 81
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 2 gggggcgagggattggagagaaaggcagttcctgatggtcccctccccaggggctggctt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggggcgagggattggagagaaaggcagttcctgatggtcccctccccaggggctggctt 60
Query: 62 tcctctggtccttccctccca 82
|||||||||||||||||||||
Sbjct: 61 tcctctggtccttccctccca 81
>27776_mml-mir-185:mirbase
Length = 82
Score = 147 bits (74), Expect = 1e-36
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 1 agggggcgagggattggagagaaaggcagttcctgatggtcccctccccaggggctggct 60
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 agggcgcgagggattggagagaaaggcagttcctgatggtcccctcctcaggggctggct 60
Query: 61 ttcctctggtccttccctccca 82
||||||||||||||||||||||
Sbjct: 61 ttcctctggtccttccctccca 82
>34015_ssc-mir-185:mirbase
Length = 76
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 8 gagggattggagagaaaggcagttcctgatggtcccctccccaggggctggctttcctct 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gagggattggagagaaaggcagttcctgatggtcccctccccaggggctggctttcctct 63
Query: 68 ggtccttccctcc 80
|||||||||||||
Sbjct: 64 ggtccttccctcc 76
>32771_rno-mir-185:mirbase
Length = 80
Score = 129 bits (65), Expect = 3e-31
Identities = 78/81 (96%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 2 gggggcgagggattggagagaaaggcagttcctgatggtcccctccccaggggctggctt 61
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 gggggtgagggattggagagaaaggcagttcctgatggtcccct-cccaggggctggctt 59
Query: 62 tcctctggtccttccctccca 82
|||||||||||||| ||||||
Sbjct: 60 tcctctggtccttctctccca 80
>31901_mmu-mir-185:mirbase
Length = 65
Score = 115 bits (58), Expect = 5e-27
Identities = 65/66 (98%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 9 agggattggagagaaaggcagttcctgatggtcccctccccaggggctggctttcctctg 68
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 agggattggagagaaaggcagttcctgatggtcccct-cccaggggctggctttcctctg 59
Query: 69 gtcctt 74
||||||
Sbjct: 60 gtcctt 65
>33253_bta-mir-185:mirbase
Length = 79
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 2 gggggcgagggattggagagaaaggcagttcctgatggtcccctccccaggggctggctt 61
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggggtgagggactggagagaaaggcagttcctgatggtcccctccccaggggctggctt 60
Query: 62 tcctc 66
|||||
Sbjct: 61 tcctc 65
>26740_cfa-mir-185:mirbase
Length = 56
Score = 111 bits (56), Expect = 8e-26
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 15 tggagagaaaggcagttcctgatggtcccctccccaggggctggctttcctctggt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggagagaaaggcagttcctgatggtcccctccccaggggctggctttcctctggt 56
