miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28319_ggo-mir-187:mirbase
Length = 109
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 5 gggctcaccatgacacagtgtgagacctcgggctacaacataggacccgggcgctgctct 64
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 gggctcaccatgacacagtgtgagacctcgggctacaacacaggacccgggcgctgctct 64
Query: 65 gacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
>28494_hsa-mir-187:mirbase
Length = 109
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 5 gggctcaccatgacacagtgtgagacctcgggctacaacataggacccgggcgctgctct 64
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 gggctcaccatgacacagtgtgagacctcgggctacaacacaggacccgggcgctgctct 64
Query: 65 gacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
>30108_ppa-mir-187:mirbase
Length = 109
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 5 gggctcaccatgacacagtgtgagacctcgggctacaacataggacccgggcgctgctct 64
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 gggctcaccatgacacagtgtgagacctcgggctacaacacaggacccgggcgctgctct 64
Query: 65 gacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
>27778_mml-mir-187:mirbase
Length = 109
Score = 182 bits (92), Expect = 4e-47
Identities = 101/104 (97%)
Strand = Plus / Plus
Query: 6 ggctcaccatgacacagtgtgagacctcgggctacaacataggacccgggcgctgctctg 65
||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 6 ggctcactatgacacagtgtgagacctcgggctacaacacaggacccgggtgctgctctg 65
Query: 66 acccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
>28226_mne-mir-187:mirbase
Length = 109
Score = 182 bits (92), Expect = 4e-47
Identities = 101/104 (97%)
Strand = Plus / Plus
Query: 6 ggctcaccatgacacagtgtgagacctcgggctacaacataggacccgggcgctgctctg 65
||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 6 ggctcactatgacacagtgtgagacctcgggctacaacacaggacccgggtgctgctctg 65
Query: 66 acccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
>33255_bta-mir-187:mirbase
Length = 109
Score = 153 bits (77), Expect = 3e-38
Identities = 98/105 (93%)
Strand = Plus / Plus
Query: 5 gggctcaccatgacacagtgtgagacctcgggctacaacataggacccgggcgctgctct 64
|||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5 gggctccccacgacacggtgtgagacctcgggctacaacacgggacccgggcgctgctcc 64
Query: 65 gacccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 65 gacccctcgtgtcttgtgttgcagccggagggacgcaagtccgca 109
>32773_rno-mir-187:mirbase
Length = 104
Score = 135 bits (68), Expect = 7e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 30 cctcgggctacaacataggacccgggcgctgctctgacccctcgtgtcttgtgttgcagc 89
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 cctcaggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagc 84
Query: 90 cggagggacgcaggtc 105
||||||||||||||||
Sbjct: 85 cggagggacgcaggtc 100
>34017_ssc-mir-187:mirbase
Length = 78
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 25 tgagacctcgggctacaacataggacccgggcgctgctctgacccctcgtgtcttgtgtt 84
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 1 tgagacctcgggctacaacacgggactcgggcgctgctctgacccctcgtgtcttgtgtt 60
Query: 85 gcagccggagggacgcag 102
||||||||||||||||||
Sbjct: 61 gcagccggagggacgcag 78
>26742_cfa-mir-187:mirbase
Length = 68
Score = 111 bits (56), Expect = 1e-25
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 31 ctcgggctacaacataggacccgggcgctgctctgacccctcgtgtcttgtgttgcagcc 90
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 60
Query: 91 ggagggac 98
||||||||
Sbjct: 61 ggagggac 68
>31903_mmu-mir-187:mirbase
Length = 61
Score = 107 bits (54), Expect = 2e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 35 ggctacaacataggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccgg 92
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccgg 61
>27067_eca-mir-187:mirbase
Length = 61
Score = 97.6 bits (49), Expect = 2e-21
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 32 tcgggctacaacataggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccg 91
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccg 60
Query: 92 g 92
|
Sbjct: 61 g 61
>27410_mdo-mir-187:mirbase
Length = 81
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 23 tgtgagacctcgggctacaacataggacccgggcgctgctctgacccctcgtgtcttgtg 82
||||||||||| |||||||||| ||||| |||| ||| ||||| |||||||||||||||
Sbjct: 3 tgtgagacctctggctacaacacaggacacgggagcttttctgaaccctcgtgtcttgtg 62
Query: 83 ttgcagccggaggg 96
|||||||| |||||
Sbjct: 63 ttgcagccagaggg 76
>25980_gga-mir-187:mirbase
Length = 86
Score = 75.8 bits (38), Expect = 6e-15
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 23 tgtgagacctcgggctacaacataggacccgggcgctgctctgacccctcgtgtcttgtg 82
||||||||||| |||||||||| ||||| ||| ||| ||||| |||||||||||||||
Sbjct: 8 tgtgagacctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtg 67
Query: 83 ttgcagccggaggg 96
|||||||| |||||
Sbjct: 68 ttgcagccagaggg 81
>31517_oan-mir-187:mirbase
Length = 79
Score = 65.9 bits (33), Expect = 6e-12
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 23 tgtgagacctcgggctacaacataggacccgggcgctgctctgacccctcgtgtcttgtg 82
||||||||||| |||||||||| ||||| | || ||| || || |||||||||||||||
Sbjct: 1 tgtgagacctccggctacaacagaggacacaggagcttttcagaaccctcgtgtcttgtg 60
Query: 83 ttgcagccggagg 95
|||||||| ||||
Sbjct: 61 ttgcagccagagg 73
>26488_tgu-mir-187:mirbase
Length = 70
Score = 60.0 bits (30), Expect = 4e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 35 ggctacaacataggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccggag 94
|||||||||| ||||| ||| ||| ||||| ||||||||||||||||||||||| |||
Sbjct: 5 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 64
Query: 95 gg 96
||
Sbjct: 65 gg 66
>25810_xtr-mir-187:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 ccctcgtgtcttgtgttgcagcc 90
|||||||||||||||||||||||
Sbjct: 47 ccctcgtgtcttgtgttgcagcc 69
>34337_dre-mir-187:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 ctcgtgtcttgtgttgcagcc 90
|||||||||||||||||||||
Sbjct: 60 ctcgtgtcttgtgttgcagcc 80
>34617_fru-mir-187:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 ctcgtgtcttgtgttgcagcc 90
|||||||||||||||||||||
Sbjct: 62 ctcgtgtcttgtgttgcagcc 82
>34764_tni-mir-187:mirbase
Length = 65
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 ctcgtgtcttgtgttgcagcc 90
|||||||||||||||||||||
Sbjct: 40 ctcgtgtcttgtgttgcagcc 60
