miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28498_hsa-mir-190b:mirbase
Length = 79
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattaggaaccaactaaatgtcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattaggaaccaactaaatgtcaaa 60
Query: 61 catattcttacagcagcag 79
|||||||||||||||||||
Sbjct: 61 catattcttacagcagcag 79
>30264_ptr-mir-190b:mirbase
Length = 78
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattaggaaccaactaaatgtcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattaggaaccaactaaatgtcaaa 60
Query: 61 catattcttacagcagca 78
||||||||||||||||||
Sbjct: 61 catattcttacagcagca 78
>27781_mml-mir-190b:mirbase
Length = 79
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattaggaaccaactaaatgtcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattaggaaccaactaaatgtcaaa 60
Query: 61 catattcttacagcagc 77
|||||||||||||||||
Sbjct: 61 catattcttacagcagc 77
>33258_bta-mir-190b:mirbase
Length = 79
Score = 151 bits (76), Expect = 9e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattaggaaccaactaaatgtcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattaggaaccaactaaatgtcaaa 60
Query: 61 catattcttacagcag 76
||||||||||||||||
Sbjct: 61 catattcttacagcag 76
>34018_ssc-mir-190:mirbase
Length = 83
Score = 151 bits (76), Expect = 9e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattaggaaccaactaaatgtcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattaggaaccaactaaatgtcaaa 60
Query: 61 catattcttacagcag 76
||||||||||||||||
Sbjct: 61 catattcttacagcag 76
>27071_eca-mir-190b:mirbase
Length = 80
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattaggaaccaactaaatgtcaaa 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattagaaaccaactaaatgtcaaa 60
Query: 61 catattcttacagcag 76
||||||||||||||||
Sbjct: 61 catattcttacagcag 76
>26745_cfa-mir-190b:mirbase
Length = 78
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattaggaaccaactaaatgtcaaa 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||
Sbjct: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattaggaatcaactaaatatcgaa 60
Query: 61 catattcttacagcag 76
||||||||||||||||
Sbjct: 61 catattcttacagcag 76
>27412_mdo-mir-190b:mirbase
Length = 76
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 3 cttctgtgtgatatgtttgatattgggttgtttaattaggaaccaactaaatgtcaaaca 62
||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct: 1 cttctgtgtgatatgtttgatattgggttgtttgattgggaatcaactaaatgtcaaaca 60
Query: 63 tattcttacagc 74
||||||||||||
Sbjct: 61 tattcttacagc 72
>31907_mmu-mir-190b:mirbase
Length = 80
Score = 103 bits (52), Expect = 2e-23
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattaggaaccaactaaatgtcaaa 60
|||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct: 1 tgcttctgtgtgatatgtttgatattgggttgttaaattatgaaccaactgaatgtcaag 60
Query: 61 catattcttacagcag 76
|||| ||| |||||||
Sbjct: 61 catactctcacagcag 76
>32776_rno-mir-190b:mirbase
Length = 78
Score = 101 bits (51), Expect = 7e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 1 tgcttctgtgtgatatgtttgatattgggttgtttaattaggaaccaactaaatgtcaaa 60
|||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||
Sbjct: 1 tgcttctgtgtgatatgtttgatattaggttgttaaattatgaaccaactaaatgtcaaa 60
Query: 61 cat 63
|||
Sbjct: 61 cat 63
>31519_oan-mir-190b:mirbase
Length = 144
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatattgggttgtt 34
|||||||||||||||||||||| |||||||
Sbjct: 25 tctgtgtgatatgtttgatattaggttgtt 54
>24689_bfl-mir-190:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 4 ttctgtgtgatatgtttgatattgggttgtt 34
||||| ||||||||||||||||| |||||||
Sbjct: 14 ttctgggtgatatgtttgatatttggttgtt 44
>25981_gga-mir-190:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatat 25
|||||||||||||||||||||
Sbjct: 9 tctgtgtgatatgtttgatat 29
>26489_tgu-mir-190:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatat 25
|||||||||||||||||||||
Sbjct: 5 tctgtgtgatatgtttgatat 25
>26744_cfa-mir-190a:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatat 25
|||||||||||||||||||||
Sbjct: 9 tctgtgtgatatgtttgatat 29
>27411_mdo-mir-190a:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatat 25
|||||||||||||||||||||
Sbjct: 9 tctgtgtgatatgtttgatat 29
>27780_mml-mir-190a:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatat 25
|||||||||||||||||||||
Sbjct: 9 tctgtgtgatatgtttgatat 29
>28320_ggo-mir-190:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatat 25
|||||||||||||||||||||
Sbjct: 9 tctgtgtgatatgtttgatat 29
>28497_hsa-mir-190:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatat 25
|||||||||||||||||||||
Sbjct: 9 tctgtgtgatatgtttgatat 29
>30110_ppa-mir-190:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatat 25
|||||||||||||||||||||
Sbjct: 9 tctgtgtgatatgtttgatat 29
>30263_ptr-mir-190a:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatat 25
|||||||||||||||||||||
Sbjct: 9 tctgtgtgatatgtttgatat 29
>30878_ppy-mir-190:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatat 25
|||||||||||||||||||||
Sbjct: 9 tctgtgtgatatgtttgatat 29
>31518_oan-mir-190a:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatat 25
|||||||||||||||||||||
Sbjct: 6 tctgtgtgatatgtttgatat 26
>32775_rno-mir-190:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatat 25
|||||||||||||||||||||
Sbjct: 9 tctgtgtgatatgtttgatat 29
>33257_bta-mir-190a:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 tctgtgtgatatgtttgatat 25
|||||||||||||||||||||
Sbjct: 9 tctgtgtgatatgtttgatat 29
>27070_eca-mir-190:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ctgtgtgatatgtttgatat 25
||||||||||||||||||||
Sbjct: 1 ctgtgtgatatgtttgatat 20
>31906_mmu-mir-190:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ctgtgtgatatgtttgatat 25
||||||||||||||||||||
Sbjct: 1 ctgtgtgatatgtttgatat 20
>34339_dre-mir-190b:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 tgtgatatgtttgatattgggttg 32
|||||||||||||||||| |||||
Sbjct: 13 tgtgatatgtttgatattcggttg 36
