miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30883_ppy-mir-193a:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactgg 60
Query: 61 cctacaaagtcccagtcctcggcccccg 88
||||||||||||||||||||||||||||
Sbjct: 61 cctacaaagtcccagtcctcggcccccg 88
>27784_mml-mir-193a:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 4 ggatgggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactggcct 63
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 60
Query: 64 acaaagtcccagtcctcggcccccg 88
|||||||||||||||||||||||||
Sbjct: 61 acaaagtcccagtcctcggcccccg 85
>27785_mml-mir-193a:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 4 ggatgggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactggcct 63
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 60
Query: 64 acaaagtcccagtcctcggcccccg 88
|||||||||||||||||||||||||
Sbjct: 61 acaaagtcccagtcctcggcccccg 85
>28501_hsa-mir-193a:mirbase
Length = 88
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactgg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactgg 60
Query: 61 cctacaaagtcccagtcctcggcccccg 88
|||||||||||||||| |||||||||||
Sbjct: 61 cctacaaagtcccagttctcggcccccg 88
>28502_hsa-mir-193a:mirbase
Length = 88
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactgg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactgg 60
Query: 61 cctacaaagtcccagtcctcggcccccg 88
|||||||||||||||| |||||||||||
Sbjct: 61 cctacaaagtcccagttctcggcccccg 88
>30267_ptr-mir-193a:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactgg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactgg 60
Query: 61 cctacaaagtcccagtcctcggccccc 87
|||||||||||||||| ||||||||||
Sbjct: 61 cctacaaagtcccagttctcggccccc 87
>33261_bta-mir-193a:mirbase
Length = 81
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 7 tgggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactggcctaca 66
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgggagctgagagctgggtctttgcgggcgagatgaaggtgtcggttcaactggcctaca 60
Query: 67 aagtcccagtcctcggccccc 87
|||||||||||||||||||||
Sbjct: 61 aagtcccagtcctcggccccc 81
>33262_bta-mir-193a:mirbase
Length = 81
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 7 tgggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactggcctaca 66
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgggagctgagagctgggtctttgcgggcgagatgaaggtgtcggttcaactggcctaca 60
Query: 67 aagtcccagtcctcggccccc 87
|||||||||||||||||||||
Sbjct: 61 aagtcccagtcctcggccccc 81
>34021_ssc-mir-193a:mirbase
Length = 80
Score = 131 bits (66), Expect = 9e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 8 gggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactggcctacaa 67
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct: 3 gggagctgagggctgggtctttgcgggcgagatgagggtgttggttcaactggcctacaa 62
Query: 68 agtcccagtcctcggccc 85
||||||||||||||||||
Sbjct: 63 agtcccagtcctcggccc 80
>34022_ssc-mir-193a:mirbase
Length = 80
Score = 131 bits (66), Expect = 9e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 8 gggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactggcctacaa 67
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct: 3 gggagctgagggctgggtctttgcgggcgagatgagggtgttggttcaactggcctacaa 62
Query: 68 agtcccagtcctcggccc 85
||||||||||||||||||
Sbjct: 63 agtcccagtcctcggccc 80
>27074_eca-mir-193a:mirbase
Length = 81
Score = 129 bits (65), Expect = 4e-31
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 8 gggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactggcctacaa 67
||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 1 gggagctgagggctgggtctttgcgggcgagatgagggtgtcagttcaactggcctacaa 60
Query: 68 agtcccagtcctcggcccccg 88
|||||||||| ||||||||||
Sbjct: 61 agtcccagtcttcggcccccg 81
>27075_eca-mir-193a:mirbase
Length = 81
Score = 129 bits (65), Expect = 4e-31
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 8 gggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactggcctacaa 67
||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 1 gggagctgagggctgggtctttgcgggcgagatgagggtgtcagttcaactggcctacaa 60
Query: 68 agtcccagtcctcggcccccg 88
|||||||||| ||||||||||
Sbjct: 61 agtcccagtcttcggcccccg 81
>32779_rno-mir-193:mirbase
Length = 86
Score = 111 bits (56), Expect = 8e-26
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 8 gggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactggcctacaa 67
|||||||||| ||||||||||||||||| |||||| |||||| | |||||||||||||||
Sbjct: 7 gggagctgagagctgggtctttgcgggcaagatgagggtgtcagttcaactggcctacaa 66
Query: 68 agtcccagtcctcggc 83
||||||||||||||||
Sbjct: 67 agtcccagtcctcggc 82
>33036_rno-mir-3549:mirbase
Length = 112
Score = 111 bits (56), Expect = 8e-26
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 8 gggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactggcctacaa 67
|||||||||| ||||||||||||||||| |||||| |||||| | |||||||||||||||
Sbjct: 95 gggagctgagagctgggtctttgcgggcaagatgagggtgtcagttcaactggcctacaa 36
Query: 68 agtcccagtcctcggc 83
||||||||||||||||
Sbjct: 35 agtcccagtcctcggc 20
>26748_cfa-mir-193a:mirbase
Length = 56
Score = 95.6 bits (48), Expect = 5e-21
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 21 tgggtctttgcgggcgagatgaaggtgtcggatcaactggcctacaaagtcccagt 76
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 1 tgggtctttgcgggcgagatgagggtgtcggttcaactggcctacaaagtcccagt 56
>31910_mmu-mir-193:mirbase
Length = 66
Score = 83.8 bits (42), Expect = 2e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 19 gctgggtctttgcgggcgagatgaaggtgtcggatcaactggcctacaaagtcccagtcc 78
||||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||||
Sbjct: 5 gctgggtctttgcgggcaagatgagagtgtcagttcaactggcctacaaagtcccagtcc 64
Query: 79 tc 80
||
Sbjct: 65 tc 66
>27414_mdo-mir-193:mirbase
Length = 66
Score = 79.8 bits (40), Expect = 3e-16
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 21 tgggtctttgcgggcgagatgaaggtgtcggatcaactggcctacaaagtcccagt 76
|||||||||| ||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct: 7 tgggtctttgtgggcgagatgagggtgtcagttcaactggcctacaaagtcccagt 62
>25982_gga-mir-193a:mirbase
Length = 77
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 11 agctgagggctgggtctttgcgggcgagatga-aggt--gtcggatcaactggcctacaa 67
|||||||||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
Query: 68 agtcccagtcctcggc 83
||||||||| ||||||
Sbjct: 61 agtcccagttctcggc 76
>26491_tgu-mir-193b:mirbase
Length = 69
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 19 gctgggtctttgcgggcgagatga-aggtgtcgga--tcaactggcctacaaagtcccag 75
|||||||||||||||||||||||| |||| | | |||||||||||||||||||||||
Sbjct: 1 gctgggtctttgcgggcgagatgagaggttcctgtcttcaactggcctacaaagtcccag 60
Query: 76 tcctcggc 83
| ||||||
Sbjct: 61 ttctcggc 68
>34342_dre-mir-193a-2:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagtcctcggccc 85
|||||||||||||||||||||||| |||||||
Sbjct: 53 tcaactggcctacaaagtcccagttttcggccc 85
>34343_dre-mir-193a-3:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagtcctcggccc 85
|||||||||||||||||||||||| |||||||
Sbjct: 53 tcaactggcctacaaagtcccagttttcggccc 85
>34620_fru-mir-193:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagtc 77
|||||||||||||||||||||||||
Sbjct: 48 tcaactggcctacaaagtcccagtc 72
>34341_dre-mir-193a-1:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagt 76
||||||||||||||||||||||||
Sbjct: 59 tcaactggcctacaaagtcccagt 82
>34767_tni-mir-193:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagt 76
||||||||||||||||||||||||
Sbjct: 43 tcaactggcctacaaagtcccagt 66
>33263_bta-mir-193a-2:mirbase
Length = 53
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 55 aactggcctacaaagtcccag 75
|||||||||||||||||||||
Sbjct: 51 aactggcctacaaagtcccag 31
