miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01895;mir-193;AANU01212177.1/6700-6598 9544:Macaca mulatta
(rhesus monkey)
Length = 103
Score = 165 bits (83), Expect = 1e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 gtggtctcagaatcggggttttgagggcgagatgagtttatgttttatccaactggccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gtggtctcagaatcggggttttgagggcgagatgagtttatgttttatccaactggccct 70
Query: 61 caaagtcccgcttttggggtcat 83
|||||||||||||||||||||||
Sbjct: 71 caaagtcccgcttttggggtcat 93
>RF01895;mir-193;AAPY01325296.1/569-467 37347:Tupaia belangeri
(northern tree shrew)
Length = 103
Score = 141 bits (71), Expect = 2e-33
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 8 cagaatcggggttttgagggcgagatgagtttatgttttatccaactggccctcaaagtc 67
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 18 cagaatcggggttttgagggcgagatgagtttatgttttatccaactggcccacaaagtc 77
Query: 68 ccgcttttggggtca 82
|||||||||||||||
Sbjct: 78 ccgcttttggggtca 92
>RF01895;mir-193;AAQQ01316373.1/986-885 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 102
Score = 135 bits (68), Expect = 1e-31
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 8 cagaatcggggttttgagggcgagatgagtttatgttttatccaactggccctcaaagtc 67
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 18 cagaatcggggttttgagggcgagatgtgtttatgttttatccaactggcccacaaagtc 77
Query: 68 ccgcttttggggtcat 83
||||||||||||||||
Sbjct: 78 ccgcttttggggtcat 93
>RF01895;mir-193;AAHY01125929.1/1820-1921 10090:Mus musculus
(house mouse)
Length = 102
Score = 135 bits (68), Expect = 1e-31
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 8 cagaatcggggttttgagggcgagatgagtttatgttttatccaactggccctcaaagtc 67
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 18 cagaatcggggttttgagggcgagatgagtttgtgttttatccaactggcccacaaagtc 77
Query: 68 ccgcttttggggtcat 83
||||||||||||||||
Sbjct: 78 ccgcttttggggtcat 93
>RF01895;mir-193;ABRQ01720688.1/885-784 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 125 bits (63), Expect = 9e-29
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 1 gtggtctcagaatcggggttttgagggcgagatgagtttatgttttatccaactggccct 60
|||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||||
Sbjct: 11 gtggtcccagaatcggggttttgagggcaagatgagtttttgtttgatccaactggccca 70
Query: 61 caaagtcccgcttttggggtcat 83
|||||||||||||||||||||||
Sbjct: 71 caaagtcccgcttttggggtcat 93
>RF01895;mir-193;AAFR03028496.1/63849-63951 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 103
Score = 123 bits (62), Expect = 4e-28
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 8 cagaatcggggttttgagggcgagatgagtttatgttttatccaactggccctcaaagtc 67
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 18 cagagtcggggttttgagggcgagatgagtttatgttttatccaactggcccacaaagtc 77
Query: 68 ccgcttttgg 77
||||||||||
Sbjct: 78 ccgcttttgg 87
>RF01895;mir-193;AALT01639090.1/460-361 42254:Sorex araneus
(European shrew)
Length = 100
Score = 111 bits (56), Expect = 1e-24
Identities = 71/75 (94%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 8 cagaatcggggttttgagggcgagatgagtttatgttttatccaactggccctcaaagtc 67
||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||
Sbjct: 18 cagaatcggggttttgagggcgagatgtgttt--gttttatccaactggcccacaaagtc 75
Query: 68 ccgcttttggggtca 82
|||||||||||||||
Sbjct: 76 ccgcttttggggtca 90
>RF01895;mir-193;AADN02023913.1/103696-103594 9031:Gallus gallus
(chicken)
Length = 103
Score = 107 bits (54), Expect = 2e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 8 cagaatcggggttttgagggcgagatgagtttatgttttatccaactggccctcaaagtc 67
|||| ||||||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 18 cagagtcggggttttgggggcgagatgagcttatgttttatccaactggcccacaaagtc 77
Query: 68 ccgcttttgg 77
||||||||||
Sbjct: 78 ccgcttttgg 87
>RF01895;mir-193;AAIY01541795.1/1218-1117 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 102
Score = 99.6 bits (50), Expect = 5e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 14 cggggttttgagggcgagatgagtttatgttttatccaactggccctcaaagtcccgctt 73
||||||||||||||| |||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 24 cggggttttgagggcaagatgagttttcgtgttatccaactggcccacaaagtcccgctt 83
Query: 74 ttggggtcat 83
||||||||||
Sbjct: 84 ttggggtcat 93
>RF01895;mir-193;CU138533.13/78727-78830 7955:Danio rerio
(zebrafish)
Length = 104
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 46 tatccaactggccctcaaagtcccgcttttggg 78
|||||||||||||| ||||||||||||| ||||
Sbjct: 57 tatccaactggcccgcaaagtcccgcttctggg 89
