miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27514_age-mir-194:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
Query: 61 tgttgttacttttgatggttaccaa 85
|| ||||||||||||||||||||||
Sbjct: 61 tgctgttacttttgatggttaccaa 85
>27787_mml-mir-194-1:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
Query: 61 tgttgttacttttgatggttaccaa 85
|| ||||||||||||||||||||||
Sbjct: 61 tgctgttacttttgatggttaccaa 85
>28228_mne-mir-194:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
Query: 61 tgttgttacttttgatggttaccaa 85
|| ||||||||||||||||||||||
Sbjct: 61 tgctgttacttttgatggttaccaa 85
>28321_ggo-mir-194:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
Query: 61 tgttgttacttttgatggttaccaa 85
|| ||||||||||||||||||||||
Sbjct: 61 tgctgttacttttgatggttaccaa 85
>28504_hsa-mir-194-1:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
Query: 61 tgttgttacttttgatggttaccaa 85
|| ||||||||||||||||||||||
Sbjct: 61 tgctgttacttttgatggttaccaa 85
>30269_ptr-mir-194:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
Query: 61 tgttgttacttttgatggttaccaa 85
|| ||||||||||||||||||||||
Sbjct: 61 tgctgttacttttgatggttaccaa 85
>27078_eca-mir-194-2:mirbase
Length = 85
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 9 atcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgtta 68
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 9 atcaagtgtaacagcaactccatgtggactgggtaccaatttccagtggagatgctgtta 68
Query: 69 cttttgatggttaccaa 85
|||||||||||||||||
Sbjct: 69 cttttgatggttaccaa 85
>33265_bta-mir-194-1:mirbase
Length = 97
Score = 95.6 bits (48), Expect = 5e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgttacttttg 74
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 21 tgtaacagcaactccatgtggactgtgcgtcaatttccagtggagatgctgttacttttg 80
Query: 75 atgg 78
||||
Sbjct: 81 atgg 84
>26750_cfa-mir-194:mirbase
Length = 58
Score = 91.7 bits (46), Expect = 7e-20
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgttacttt 72
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct: 1 tgtaacagcaactccatgtggattgtgtgccaatttccagtggagatgctgttacttt 58
>34023_ssc-mir-194:mirbase
Length = 78
Score = 81.8 bits (41), Expect = 7e-17
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgttacttttg 74
||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| ||||
Sbjct: 11 tgtaacagcgactccatgtggactgtgccccaatttccagtggagatgctgttacctttg 70
Query: 75 a 75
|
Sbjct: 71 a 71
>34024_ssc-mir-194:mirbase
Length = 78
Score = 81.8 bits (41), Expect = 7e-17
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgttacttttg 74
||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| ||||
Sbjct: 11 tgtaacagcgactccatgtggactgtgccccaatttccagtggagatgctgttacctttg 70
Query: 75 a 75
|
Sbjct: 71 a 71
>25814_xtr-mir-194-1:mirbase
Length = 80
Score = 69.9 bits (35), Expect = 3e-13
Identities = 64/71 (90%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 8 tatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgtt 67
||||| ||||||||||||||||||||||||| ||| || |||||||||||||| ||||
Sbjct: 8 tatcaggtgtaacagcaactccatgtggact-tgt-ccgtattccagtggagatgctgtt 65
Query: 68 acttttgatgg 78
|||||||||||
Sbjct: 66 acttttgatgg 76
>25667_xla-mir-194:mirbase
Length = 79
Score = 67.9 bits (34), Expect = 1e-12
Identities = 59/65 (90%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgttactttt 73
||||||||||||||||||||||||| ||| | ||||||||||||||| ||||||||||
Sbjct: 14 gtgtaacagcaactccatgtggact-tgtcct--tttccagtggagatgctgttactttt 70
Query: 74 gatgg 78
|||||
Sbjct: 71 gatgg 75
>32780_rno-mir-194-1:mirbase
Length = 83
Score = 67.9 bits (34), Expect = 1e-12
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 9 atcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgtta 68
|||| |||||||||||||||||||||||||||| | || | ||||||||| || |||||
Sbjct: 9 atcacgtgtaacagcaactccatgtggactgtgca-cagatcccagtggagctgctgtta 67
Query: 69 cttttgatgg 78
||||||||||
Sbjct: 68 cttttgatgg 77
>31523_oan-mir-194-1:mirbase
Length = 98
Score = 63.9 bits (32), Expect = 2e-11
Identities = 65/75 (86%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 4 gtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgt 63
||||||||| |||||||||||||||||||||| | || | |||||||||||||| |
Sbjct: 11 gtgttatcatatgtaacagcaactccatgtggattatg--ctgatttccagtggagaggc 68
Query: 64 tgttacttttgatgg 78
|||||||||||||||
Sbjct: 69 tgttacttttgatgg 83
>26492_tgu-mir-194-1:mirbase
Length = 72
Score = 58.0 bits (29), Expect = 1e-09
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgttacttttg 74
|||||||||||||||||||||||| || | |||||||||||||| |||||||||||
Sbjct: 11 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 68
Query: 75 atgg 78
||||
Sbjct: 69 atgg 72
>26493_tgu-mir-194-2:mirbase
Length = 72
Score = 58.0 bits (29), Expect = 1e-09
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgttacttttg 74
|||||||||||||||||||||||| || | |||||||||||||| |||||||||||
Sbjct: 11 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 68
Query: 75 atgg 78
||||
Sbjct: 69 atgg 72
>31912_mmu-mir-194-1:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggactgtg 41
||||||||||||||||||||||||||||
Sbjct: 6 gtgtaacagcaactccatgtggactgtg 33
>25984_gga-mir-194:mirbase
Length = 75
Score = 54.0 bits (27), Expect = 2e-08
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgttacttttg 74
||||||||||||||||||||||| | || | |||||||||||||| |||||||||||
Sbjct: 14 tgtaacagcaactccatgtggac--tacactgacttccagtggagatgctgttacttttg 71
Query: 75 at 76
||
Sbjct: 72 at 73
>25514_pma-mir-194:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 atcaagtgtaacagcaactccatgtgga 36
|||| |||||||||||||||||||||||
Sbjct: 11 atcaggtgtaacagcaactccatgtgga 38
>25815_xtr-mir-194-2:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>27077_eca-mir-194:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>27788_mml-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>28505_hsa-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>31524_oan-mir-194-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 18 tgtaacagcaactccatgtgga 39
>31913_mmu-mir-194-2:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>32781_rno-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>33266_bta-mir-194-2:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>34345_dre-mir-194a:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>34621_fru-mir-194:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 8 tgtaacagcaactccatgtgga 29
>34768_tni-mir-194:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 11 tgtaacagcaactccatgtgga 32
