miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00257;mir-194;AY866323.1/164-248 9545:Macaca nemestrina
(pig-tailed macaque)
Length = 85
Score = 161 bits (81), Expect = 2e-39
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
Query: 61 tgttgttacttttgatggttaccaa 85
|| ||||||||||||||||||||||
Sbjct: 61 tgctgttacttttgatggttaccaa 85
>RF00257;mir-194;AANN01206173.1/2762-2845 9365:Erinaceus europaeus
(western European hedgehog)
Length = 84
Score = 109 bits (55), Expect = 6e-24
Identities = 68/71 (95%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 ttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgt 66
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 7 ttatcaagtgtaacagcaactccatgtggactgtgta-caatttccagtggagatgctgt 65
Query: 67 tacttttgatg 77
|| ||||||||
Sbjct: 66 tatttttgatg 76
>RF00257;mir-194;AAIY01186786.1/2214-2298 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 85
Score = 105 bits (53), Expect = 9e-23
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 9 atcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgtta 68
||||| |||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct: 10 atcaaatgtaacagcaactccatgtggactgtgt-ctaatttccagtggagatgctgtta 68
Query: 69 cttttgatggttaccaa 85
||||||||| |||||||
Sbjct: 69 cttttgatgcttaccaa 85
>RF00257;mir-194;AAFC03085979.1/1394-1478 9913:Bos taurus (cattle)
Length = 85
Score = 95.6 bits (48), Expect = 9e-20
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgttacttttg 74
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgcgtcaatttccagtggagatgctgttacttttg 74
Query: 75 atgg 78
||||
Sbjct: 75 atgg 78
>RF00257;mir-194;ABRO01051746.1/2439-2355 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 89.7 bits (45), Expect = 5e-18
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 8 tatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgtt 67
||||| |||||||||||||||||||||||||||| | ||||| ||||||||| || ||||
Sbjct: 8 tatcaggtgtaacagcaactccatgtggactgtgaagcaattcccagtggagctgctgtt 67
Query: 68 acttttgatggttacca 84
|||| ||||||| ||||
Sbjct: 68 acttctgatggtcacca 84
>RF00257;mir-194;AAGU02014260.1/2999-2915 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 89.7 bits (45), Expect = 5e-18
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 1 atggtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggaga 60
|||| |||||||| ||||||||||||||||||||||| ||||| | ||||||||| ||
Sbjct: 1 atggagttatcaaatgtaacagcaactccatgtggaccaggtaccgacttccagtgggga 60
Query: 61 tgttgttacttttgatggttaccaa 85
|| ||||||||||||||| ||||||
Sbjct: 61 tgctgttacttttgatggctaccaa 85
>RF00257;mir-194;AAPN01089469.1/14273-14191 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 63.9 bits (32), Expect = 3e-10
Identities = 65/75 (86%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 4 gtgttatcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgt 63
||||||||| |||||||||||||||||||||| | || | |||||||||||||| |
Sbjct: 4 gtgttatcatatgtaacagcaactccatgtggattatg--ctgatttccagtggagaggc 61
Query: 64 tgttacttttgatgg 78
|||||||||||||||
Sbjct: 62 tgttacttttgatgg 76
>RF00257;mir-194;AAWZ01016377.1/110498-110415 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 10 tcaagtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgttac 69
||||||||||||||||||||||||||| | ||| ||||||||||||| || ||||||
Sbjct: 11 tcaagtgtaacagcaactccatgtggaataagta--gatttccagtggaggtgctgttac 68
Query: 70 ttttga 75
||||||
Sbjct: 69 ttttga 74
>RF00257;mir-194;CAAA01010876.1/4210-4293 10090:Mus musculus
(house mouse)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgttactttt 73
|||||||||||||||||||||||||||| | | ||||||||||| || |||||||| |
Sbjct: 14 gtgtaacagcaactccatgtggactgtgctcgga-ttccagtggagctgctgttacttct 72
Query: 74 gatgg 78
|||||
Sbjct: 73 gatgg 77
>RF00257;mir-194;AADN02012132.1/23965-23883 9031:Gallus gallus
(chicken)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgttacttttg 74
||||||||||||||||||||||| | || | |||||||||||||| |||||||||||
Sbjct: 15 tgtaacagcaactccatgtggac--tacactgacttccagtggagatgctgttacttttg 72
Query: 75 at 76
||
Sbjct: 73 at 74
>RF00257;mir-194;AALT01482191.1/6150-6232 42254:Sorex araneus
(European shrew)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 agtgtaacagcaactccatgtggactgtgt 42
||||||||||||||||||||||||| ||||
Sbjct: 13 agtgtaacagcaactccatgtggaccgtgt 42
>RF00257;mir-194;AAPN01023116.1/334-252 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>RF00257;mir-194;AAGV020435009.1/201-286 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AAFC03033465.1/1804-1720 9913:Bos taurus (cattle)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;ABRN01259841.1/10643-10728 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AC127556.4/107031-107116 10090:Mus musculus
(house mouse)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;ABRO01037016.1/11275-11359 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AAYZ01125558.1/495-410 9978:Ochotona princeps
(American pika)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AAIY01704218.1/1027-942 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;ABRQ01130986.1/8094-8179 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;BX248510.4/109392-109307 7955:Danio rerio
(zebrafish)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;CAAB01000046.1/113108-113195 31033:Takifugu
rubripes
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AANH01000564.1/249696-249610 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;BAAE01291848.1/854-770 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
