miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00256;mir-196;ABRQ01001823.1/1565-1475 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 7 ctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaactcggca 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaactcggca 60
Query: 67 acaagaaactgcctgagttacatcagtcggt 97
|||||||||||||||||||||||||||||||
Sbjct: 61 acaagaaactgcctgagttacatcagtcggt 91
>RF00256;mir-196;AADN02023992.1/310-221 9031:Gallus gallus
(chicken)
Length = 90
Score = 97.6 bits (49), Expect = 3e-20
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 9 cagctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaactcggcaac 68
|||||||||||||| ||||||||||||||||||||||||||| | ||| | |||||||||
Sbjct: 3 cagctgatctgtggtttaggtagtttcatgttgttgggattg-gcttttagctcggcaac 61
Query: 69 aagaaactgcctgagttacatcagt 93
|||||||||||| | |||| |||||
Sbjct: 62 aagaaactgccttaattacgtcagt 86
>RF00256;mir-196;AAVX01058829.1/1428-1517 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 75.8 bits (38), Expect = 1e-13
Identities = 72/82 (87%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 12 ctgatctgtggcttaggtagtttcatgttgttgggattgagttttgaactcggcaacaag 71
||||| ||||| ||||||||||||||||||||||||| | | ||| |||||| |||||||
Sbjct: 6 ctgatgtgtggtttaggtagtttcatgttgttgggatcg-ggtttaaactcgacaacaag 64
Query: 72 aaactgcctgagttacatcagt 93
||||||||| | |||| |||||
Sbjct: 65 aaactgccttaattacgtcagt 86
>RF00256;mir-196;AADN02000989.1/695-605 9031:Gallus gallus
(chicken)
Length = 91
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 16 tctgtggcttaggtagtttcatgttgttggg 46
||||||| |||||||||||||||||||||||
Sbjct: 10 tctgtggtttaggtagtttcatgttgttggg 40
>RF00256;mir-196;CR382300.12/76136-76225 7955:Danio rerio
(zebrafish)
Length = 90
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 19 gtggcttaggtagtttcatgttgttgggatt 49
|||| ||||||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttgggatt 43
>RF00256;mir-196;EU025682.1/4924-5014 8030:Salmo salar (Atlantic
salmon)
Length = 91
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 19 gtggcttaggtagtttcatgttgttgggat 48
|||| |||||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttgggat 42
>RF00256;mir-196;AB232922.1/118684-118594 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 52.0 bits (26), Expect = 2e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 19 gtggcttaggtagtttcatgttgttgggattgagttttgaactcggcaacaagaaactgc 78
|||| ||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttggggttggcttcctggctcggcaacaagaaactgc 72
Query: 79 ct 80
||
Sbjct: 73 ct 74
>RF00256;mir-196;AAWZ01014174.1/114912-115004 28377:Anolis
carolinensis (green anole)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 16 tctgtggcttaggtagtttcatgttgttggga 47
||||||| ||||||||||||| ||||||||||
Sbjct: 10 tctgtggattaggtagtttcacgttgttggga 41
>RF00256;mir-196;BAAE01222104.1/303-214 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 gtggcttaggtagtttcatgttgttggg 46
|||| |||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AAGU02055285.1/1599-1508 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AAWZ01035904.1/53611-53705 28377:Anolis
carolinensis (green anole)
Length = 95
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;FJ497005.1/156594-156684 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;FJ497006.1/141864-141954 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AADN02070198.1/2795-2886 9031:Gallus gallus
(chicken)
Length = 92
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AC132195.4/6836-6926 31136:Polypterus bichir
Length = 91
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 17 ttaggtagtttcatgttgttggg 39
>RF00256;mir-196;AF224262.1/4259-4348 7792:Heterodontus francisci
(horn shark)
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 ttaggtagtttcatgttgttggg 46
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AF464190.1/27447-27540 7757:Petromyzon marinus
(sea lamprey)
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 taggtagtttcatgttgttggg 46
||||||||||||||||||||||
Sbjct: 19 taggtagtttcatgttgttggg 40
