miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28509_hsa-mir-196b:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 actggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacg 60
Query: 61 acactgccttcattacttcagttg 84
||||||||||||||||||||||||
Sbjct: 61 acactgccttcattacttcagttg 84
>31917_mmu-mir-196b:mirbase
Length = 85
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 actggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 actggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacg 61
Query: 61 acactgccttcattacttcagttg 84
||||||||||||||||||||||||
Sbjct: 62 acactgccttcattacttcagttg 85
>32784_rno-mir-196b:mirbase
Length = 85
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 actggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 actggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacg 61
Query: 61 acactgccttcattacttcagttg 84
||||||||||||||||||||||||
Sbjct: 62 acactgccttcattacttcagttg 85
>33270_bta-mir-196b:mirbase
Length = 85
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 actggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 actggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacg 61
Query: 61 acactgccttcattacttcagttg 84
||||||||||||||||||||||||
Sbjct: 62 acactgccttcattacttcagttg 85
>30273_ptr-mir-196b:mirbase
Length = 83
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 actggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacg 60
Query: 61 acactgccttcattacttcagtt 83
|||||||||||||||||||||||
Sbjct: 61 acactgccttcattacttcagtt 83
>27081_eca-mir-196b:mirbase
Length = 84
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 actggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 actggtcggtgatttaggtagtttcctgttgttgggatccagctttctctcgacagcacg 60
Query: 61 acactgccttcattacttcagttg 84
||||||||||||||||||||||||
Sbjct: 61 acactgccttcattacttcagttg 84
>34027_ssc-mir-196b:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 2 ctggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacga 60
Query: 62 cactgccttcattacttcag 81
||||||||||||||||||||
Sbjct: 61 cactgccttcattacttcag 80
>34028_ssc-mir-196b:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 2 ctggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacga 60
Query: 62 cactgccttcattacttcag 81
||||||||||||||||||||
Sbjct: 61 cactgccttcattacttcag 80
>27792_mml-mir-196b:mirbase
Length = 75
Score = 149 bits (75), Expect = 4e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 actggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actggtcggtgatttaggtagtttcctgttgttgggatccacctttctctcgacagcacg 60
Query: 61 acactgccttcatta 75
|||||||||||||||
Sbjct: 61 acactgccttcatta 75
>31526_oan-mir-196b:mirbase
Length = 85
Score = 135 bits (68), Expect = 5e-33
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 actggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctcgacagcac 59
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2 actggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagcac 61
Query: 60 gacactgccttcattacttcagtt 83
||||||||||||||||||||||||
Sbjct: 62 gacactgccttcattacttcagtt 85
>27416_mdo-mir-196b:mirbase
Length = 86
Score = 129 bits (65), Expect = 3e-31
Identities = 81/85 (95%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 actggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctcgacagcac 59
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2 actggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagcac 61
Query: 60 gacactgccttcattacttcagttg 84
|| ||||||||||||||||||||||
Sbjct: 62 gatactgccttcattacttcagttg 86
>26754_cfa-mir-196b:mirbase
Length = 58
Score = 115 bits (58), Expect = 5e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 15 taggtagtttcctgttgttgggatccacctttctctcgacagcacgacactgccttca 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taggtagtttcctgttgttgggatccacctttctctcgacagcacgacactgccttca 58
>25986_gga-mir-196-2:mirbase
Length = 94
Score = 89.7 bits (45), Expect = 3e-19
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 13 tttaggtagtttcctgttgttggga-tccacctttctctcgacagcacgacactgccttc 71
||||||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct: 14 tttaggtagtttcatgttgttggggctccacctttctctctacagcacgaaactgcctta 73
Query: 72 attacttcagttg 84
|||||||||||||
Sbjct: 74 attacttcagttg 86
>25817_xtr-mir-196b:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 13 tttaggtagtttcctgttgttggg-atccacctttctctcgacagcacgacactgccttc 71
|||||||||||| |||||||||| || |||||||||||| ||| || || ||||||||
Sbjct: 14 tttaggtagttttatgttgttgggcattcacctttctctctacaacaagaaactgcctta 73
Query: 72 attacttcagt 82
||||| |||||
Sbjct: 74 attacatcagt 84
>25816_xtr-mir-196a:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tttaggtagtttcctgttgttgggat 38
||||||||||||| ||||||||||||
Sbjct: 23 tttaggtagtttcatgttgttgggat 48
>25987_gga-mir-196-3:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tttaggtagtttcctgttgttgggat 38
||||||||||||| ||||||||||||
Sbjct: 22 tttaggtagtttcatgttgttgggat 47
>34347_dre-mir-196a-1:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tttaggtagtttcctgttgttgggat 38
||||||||||||| ||||||||||||
Sbjct: 19 tttaggtagtttcatgttgttgggat 44
>34348_dre-mir-196a-2:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tttaggtagtttcctgttgttgggat 38
||||||||||||| ||||||||||||
Sbjct: 9 tttaggtagtttcatgttgttgggat 34
>27515_age-mir-196:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 ttaggtagtttcctgttgttgggat 38
|||||||||||| ||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttgggat 48
>27580_lla-mir-196:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 ttaggtagtttcctgttgttgggat 38
|||||||||||| ||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttgggat 48
>27791_mml-mir-196a-2:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 ttaggtagtttcctgttgttgggat 38
|||||||||||| ||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttgggat 48
>28324_ggo-mir-196-2:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 ttaggtagtttcctgttgttgggat 38
|||||||||||| ||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttgggat 48
>28508_hsa-mir-196a-2:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 ttaggtagtttcctgttgttgggat 38
|||||||||||| ||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttgggat 48
>30112_ppa-mir-196:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 ttaggtagtttcctgttgttgggat 38
|||||||||||| ||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttgggat 48
>30272_ptr-mir-196a-2:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 ttaggtagtttcctgttgttgggat 38
|||||||||||| ||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttgggat 48
>30888_ppy-mir-196-2:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 ttaggtagtttcctgttgttgggat 38
|||||||||||| ||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttgggat 48
>31525_oan-mir-196a:mirbase
Length = 114
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 ttaggtagtttcctgttgttgggat 38
|||||||||||| ||||||||||||
Sbjct: 28 ttaggtagtttcatgttgttgggat 52
>31916_mmu-mir-196a-2:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 ttaggtagtttcctgttgttgggat 38
|||||||||||| ||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttgggat 39
>32783_rno-mir-196a:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 ttaggtagtttcctgttgttgggat 38
|||||||||||| ||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttgggat 48
>33269_bta-mir-196a-2:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 ttaggtagtttcctgttgttgggat 38
|||||||||||| ||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttgggat 39
>34026_ssc-mir-196a:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 ttaggtagtttcctgttgttgggat 38
|||||||||||| ||||||||||||
Sbjct: 21 ttaggtagtttcatgttgttgggat 45
>34623_fru-mir-196a-2:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 13 tttaggtagtttcctgttgttgggatcca 41
||||||||||||| |||||||||| ||||
Sbjct: 9 tttaggtagtttcatgttgttggggtcca 37
>34770_tni-mir-196a-2:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 13 tttaggtagtttcctgttgttgggatcca 41
||||||||||||| |||||||||| ||||
Sbjct: 9 tttaggtagtttcatgttgttggggtcca 37
>25985_gga-mir-196-1:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 9 gtgatttaggtagtttcctgttgttggg 36
|||| |||||||||||| ||||||||||
Sbjct: 18 gtgaattaggtagtttcatgttgttggg 45
>26752_cfa-mir-196a-1:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 9 gtgatttaggtagtttcctgttgttggg 36
|||| |||||||||||| ||||||||||
Sbjct: 9 gtgaattaggtagtttcatgttgttggg 36
>26753_cfa-mir-196a-2:mirbase
Length = 59
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 taggtagtttcctgttgttgggat 38
||||||||||| ||||||||||||
Sbjct: 1 taggtagtttcatgttgttgggat 24
>27080_eca-mir-196a:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 9 gtgatttaggtagtttcctgttgttggg 36
|||| |||||||||||| ||||||||||
Sbjct: 1 gtgagttaggtagtttcatgttgttggg 28
>27790_mml-mir-196a-1:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 9 gtgatttaggtagtttcctgttgttggg 36
|||| |||||||||||| ||||||||||
Sbjct: 1 gtgaattaggtagtttcatgttgttggg 28
>28323_ggo-mir-196-1:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 9 gtgatttaggtagtttcctgttgttggg 36
|||| |||||||||||| ||||||||||
Sbjct: 1 gtgaattaggtagtttcatgttgttggg 28
>28507_hsa-mir-196a-1:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 9 gtgatttaggtagtttcctgttgttggg 36
|||| |||||||||||| ||||||||||
Sbjct: 1 gtgaattaggtagtttcatgttgttggg 28
>30887_ppy-mir-196-1:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 9 gtgatttaggtagtttcctgttgttggg 36
|||| |||||||||||| ||||||||||
Sbjct: 1 gtgaattaggtagtttcatgttgttggg 28
>33268_bta-mir-196a-1:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 9 gtgatttaggtagtttcctgttgttggg 36
|||| |||||||||||| ||||||||||
Sbjct: 18 gtgaattaggtagtttcatgttgttggg 45
>34349_dre-mir-196b:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 9 gtgatttaggtagtttcctgttgttggg 36
||||||||||||||||| |||||||||
Sbjct: 5 gtgatttaggtagtttcaagttgttggg 32
>34351_dre-mir-196d:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 9 gtgatttaggtagtttcctgttgttggg 36
|||||||||||||||| ||||||||||
Sbjct: 2 gtgatttaggtagttttatgttgttggg 29
>34622_fru-mir-196a-1:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 tttaggtagtttcctgttgttggg 36
||||||||||||| ||||||||||
Sbjct: 14 tttaggtagtttcatgttgttggg 37
>34769_tni-mir-196a-1:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 tttaggtagtttcctgttgttggg 36
||||||||||||| ||||||||||
Sbjct: 14 tttaggtagtttcatgttgttggg 37
>30271_ptr-mir-196a-1:mirbase
Length = 69
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 ttaggtagtttcctgttgttggg 36
|||||||||||| ||||||||||
Sbjct: 5 ttaggtagtttcatgttgttggg 27
