miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 151 bits (76), Expect = 4e-36
Identities = 110/121 (90%), Gaps = 4/121 (3%)
Strand = Plus / Minus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatttc 92
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 121 tactccctccgttcgataattcttgtctcaaatttgaccaaaaatgaatgtatctattcc 62
Query: 93 taaaaaatgtctaaatacatgtaatatttcgacaagaatgaattatgaaacgaagggagt 152
|||||| |||||| |||||||||||||||| |||| ||||||||||||| |||||||
Sbjct: 61 taaaaagtgtctagatacatgtaatatttcaacaa----gaattatgaaacggagggagt 6
Query: 153 a 153
|
Sbjct: 5 a 5
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgt 58
||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgtttcataattcttgt 30
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 149 bits (75), Expect = 1e-35
Identities = 93/99 (93%)
Strand = Plus / Minus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatttc 92
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct: 121 tactccctccgttccataattcttgtctcaaatttgcccaaaattggatgtatctattcc 62
Query: 93 taaaaaatgtctaaatacatgtaatatttcgacaagaat 131
|||||| ||||| |||||||||||||||||||||||||
Sbjct: 61 taaaaagcgtctagatacatgtaatatttcgacaagaat 23
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 29 ctactactccctccgttccataattcttgtc 59
|||||||| |||| |||||||||||||||||
Sbjct: 1 ctactactacctctgttccataattcttgtc 31
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 141 bits (71), Expect = 3e-33
Identities = 92/99 (92%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatttc 92
||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 5 tactccctccgtttcataattcttgtctcaaatttgctcaaaaatagatgtatctatttc 64
Query: 93 taaaaaatgtctaaatacatgtaatatttcgacaagaat 131
|||||| |||||| ||||||||||||||| |||||||||
Sbjct: 65 taaaaagtgtctagatacatgtaatattttgacaagaat 103
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 30 tactactccctccgttccataattcttgtc 59
|||||||| ||||||| |||||||||||||
Sbjct: 124 tactactcactccgtttcataattcttgtc 95
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 137 bits (69), Expect = 5e-32
Identities = 93/101 (92%)
Strand = Plus / Plus
Query: 31 actactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatt 90
|||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct: 3 actactccctccgttccataattcttgtctcaaagttgctcaaaaatggatgtatctatt 62
Query: 91 tctaaaaaatgtctaaatacatgtaatatttcgacaagaat 131
|||||| |||||| |||||||||| ||||||||||||||
Sbjct: 63 cataaaaagtgtctagatacatgtaagatttcgacaagaat 103
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 32 ctactccctccgttccataattcttgtc 59
|||||||| |||||||||||||||||||
Sbjct: 122 ctactcccgccgttccataattcttgtc 95
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 133 bits (67), Expect = 8e-31
Identities = 94/102 (92%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 32 ctactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctattt 91
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 4 ctactccctccgttccataattcttgtctcaaattaacccaaaaatggatgtatctattc 63
Query: 92 ctaaaaa--atgtctaaatacatgtaatatttcgacaagaat 131
||||||| | ||||| |||||||||||||||||||||||||
Sbjct: 64 ctaaaaaacacgtctagatacatgtaatatttcgacaagaat 105
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 33 tactccctccgttccataattcttgtc 59
|||||||||||||||||||||||||||
Sbjct: 123 tactccctccgttccataattcttgtc 97
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 125 bits (63), Expect = 2e-28
Identities = 90/99 (90%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatttc 92
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct: 5 tactccctccgttccataatttttgtctcaaatttgcccaaaaatggatgtatctattcc 64
Query: 93 taaaaaatgtctaaatacatgtaatatttcgacaagaat 131
||||| || || ||||||| |||||||||||||||||
Sbjct: 65 taaaaggcgtttagatacatgcaatatttcgacaagaat 103
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 125 bits (63), Expect = 2e-28
Identities = 90/99 (90%)
Strand = Plus / Minus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatttc 92
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 121 tactccttccgttccataattcttgtctcaaatttgcccaaaaatggatgtatctattcc 62
Query: 93 taaaaaatgtctaaatacatgtaatatttcgacaagaat 131
| | |||||| |||||||||||||||||||||||||
Sbjct: 61 ttcgaggtgtctagatacatgtaatatttcgacaagaat 23
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgtc 59
|||| ||||||||||||||||||||||
Sbjct: 5 tacttcctccgttccataattcttgtc 31
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 119 bits (60), Expect = 1e-26
Identities = 106/121 (87%), Gaps = 4/121 (3%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatttc 92
||||| ||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||
Sbjct: 5 tactctctccgtttcataattcttgtctcaaatttgctcaaagatggatgtatctatttc 64
Query: 93 taaaaaatgtctaaatacatgtaatatttcgacaagaatgaattatgaaacgaagggagt 152
||||| ||||| ||||||||||||||||||| |||||||| |||||| |||||||
Sbjct: 65 taaaatgcgtctagatacatgtaatatttcgac----atgaattacgaaacggagggagt 120
Query: 153 a 153
|
Sbjct: 121 a 121
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 119 bits (60), Expect = 1e-26
Identities = 90/99 (90%), Gaps = 2/99 (2%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatttc 92
||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 5 tactccctccgtttcataattcttgtctcaaattt--ccaaaaatggatgtatctatttt 62
Query: 93 taaaaaatgtctaaatacatgtaatatttcgacaagaat 131
||||||| |||| ||||||||||||||||||| |||||
Sbjct: 63 aaaaaaatatctagatacatgtaatatttcgacgagaat 101
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 109 bits (55), Expect = 1e-23
Identities = 86/95 (90%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 38 cctccgttccataattctt-gtctcaaatttgcccaaaaatgaatgtatctatttctaaa 96
|||||||||||||||| || ||||||||||||||||||| |||||||||||||| |||||
Sbjct: 117 cctccgttccataattttttgtctcaaatttgcccaaaattgaatgtatctattactaaa 58
Query: 97 aaatgtctaaatacatgtaatatttcgacaagaat 131
|| ||||| ||||| ||||| |||||||||||||
Sbjct: 57 aagcgtctagatacacgtaatgtttcgacaagaat 23
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgtc 59
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccataattcttgtc 31
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 107 bits (54), Expect = 5e-23
Identities = 106/123 (86%), Gaps = 4/123 (3%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatttc 92
|||| |||||||| ||||||||||| ||| |||||| ||||||||| |||||| ||||
Sbjct: 5 tactacctccgtttcataattcttggctcgaatttgtccaaaaatggatgtatatattca 64
Query: 93 taaaaaatgtctaaatacatgtaatatttcgacaagaatgaattatgaaacgaagggagt 152
||||||| ||||| |||||||||| |||||||||| ||||||||||||| |||||||
Sbjct: 65 taaaaaacgtctagatacatgtaagatttcgacaa----gaattatgaaacggagggagt 120
Query: 153 att 155
|||
Sbjct: 121 att 123
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 33 tactccctccgttccataattcttgtc 59
||||||||||||| |||||||||||||
Sbjct: 121 tactccctccgtttcataattcttgtc 95
>RF00906;MIR1122;EU730902.1/30283-30160 15368:Brachypodium
distachyon
Length = 124
Score = 101 bits (51), Expect = 3e-21
Identities = 88/99 (88%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatttc 92
|||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 5 tactccctccatttcataattcttgtctcaaatttgcccaaaaatg-atgtagctatttc 63
Query: 93 taaaaaatgtctaaatacatgtaatatttcgacaagaat 131
|||||| || || || ||| | ||||||||||||||||
Sbjct: 64 taaaaagcgtttagatgcatctgatatttcgacaagaat 102
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 97.6 bits (49), Expect = 5e-20
Identities = 85/97 (87%)
Strand = Plus / Minus
Query: 32 ctactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctattt 91
|||||||||||| |||||| | ||||||||||||||| |||| |||||||||||||| |
Sbjct: 122 ctactccctccgatccatattacttgtctcaaatttgatcaaatatgaatgtatctatgt 63
Query: 92 ctaaaaaatgtctaaatacatgtaatatttcgacaag 128
|||||| || ||| ||| ||||||||||||||||||
Sbjct: 62 ttaaaaagtgactagataaatgtaatatttcgacaag 26
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 95.6 bits (48), Expect = 2e-19
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatttc 92
||||||||||| ||||| | ||||||||||||||||||||| | ||||| |||||| |
Sbjct: 121 tactccctccgacccatattacttgtctcaaatttgcccaaatacgaatgcatctatgtt 62
Query: 93 taaaaaatgtctaaatacatgtaatatttcgacaag 128
|||||| ||||| ||||||||||||||||||||||
Sbjct: 61 taaaaagcgtctagatacatgtaatatttcgacaag 26
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 93.7 bits (47), Expect = 7e-19
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 54 cttgtctcaaatttgcccaaaaatgaatgtatctatttctaaaaaatgtctaaatacatg 113
||||||||||||||||||||| | ||||||||||| | |||||| |||||| |||||||
Sbjct: 100 cttgtctcaaatttgcccaaatacgaatgtatctacgtgtaaaaagtgtctagatacatg 41
Query: 114 taatatttcgacaag 128
|||||||||||||||
Sbjct: 40 taatatttcgacaag 26
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 93.7 bits (47), Expect = 7e-19
Identities = 84/95 (88%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatttc 92
||||||||||| || | ||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 120 tactccctccgatcta-aattcttgtctcaaatttgcccaaatatggatgtatctattct 62
Query: 93 taaaaaatgtctaaatacatgtaatatttcgacaa 127
||||| ||||| |||||||||||||||||||||
Sbjct: 61 taaaacgcgtctagatacatgtaatatttcgacaa 27
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 85.7 bits (43), Expect = 2e-16
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 54 cttgtctcaaatttgcccaaaaatgaatgtatctatttctaaaaaatgtctaaatacatg 113
||||||||||||||| ||||| | |||||||||||| | |||||| ||||| |||||||
Sbjct: 100 cttgtctcaaatttgtccaaatacgaatgtatctatgtgtaaaaagagtctagatacatg 41
Query: 114 taatatttcgacaag 128
|||||||||||||||
Sbjct: 40 taatatttcgacaag 26
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 85.7 bits (43), Expect = 2e-16
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatttc 92
||||||||| | ||| |||||||| |||||||||||||||| ||| || ||||||||
Sbjct: 121 tactccctctgatcctaaattcttgactcaaatttgcccaaatatggatatatctattct 62
Query: 93 taaaaaatgtctaaatacatgtaatatttcgacaa 127
|||||| ||||| |||||||||||||||||||||
Sbjct: 61 taaaaagcgtctagatacatgtaatatttcgacaa 27
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 81.8 bits (41), Expect = 3e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 55 ttgtctcaaatttgcccaaaaatgaatgtatctatttctaaaaaatgtctaaatacatgt 114
|||||||||||||||||| | ||| |||||||||| ||||||| ||||| ||||||||
Sbjct: 27 ttgtctcaaatttgcccagatatggatgtatctatgcctaaaaagcgtctagatacatgt 86
Query: 115 aatatttcgacaa 127
|||||||||||||
Sbjct: 87 aatatttcgacaa 99
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 77.8 bits (39), Expect = 4e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 56 tgtctcaaatttgcccaaaaatgaatgtatctatttctaaaaaatgtctaaatacatgta 115
||||||||||||||||||| ||| |||||||||| ||||||| |||| |||||||||
Sbjct: 27 tgtctcaaatttgcccaaatatggatgtatctatacctaaaaagcatctagatacatgta 86
Query: 116 atatttcgaca 126
|||||||||||
Sbjct: 87 atatttcgaca 97
>RF00906;MIR1122;EU730896.1/41625-41750 15368:Brachypodium
distachyon
Length = 126
Score = 75.8 bits (38), Expect = 2e-13
Identities = 81/94 (86%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 39 ctccgttccataattcttgtctcaaatttg-cccaaaaatgaatgtatctatttctaaaa 97
|||||||||||||||||||||||||||||| ||||||| |||||| |||| | ||||
Sbjct: 11 ctccgttccataattcttgtctcaaatttgataaaaaaatggatgtatttattccgaaaa 70
Query: 98 aatgtctaaatacatgtaatatttcgacaagaat 131
| |||||| ||| |||||||||| |||||||||
Sbjct: 71 agtgtctagatatatgtaatattgagacaagaat 104
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 33 tactccctccgttccataattcttgtctcaa 63
|||||||||||||||||||||||||||||||
Sbjct: 122 tactccctccgttccataattcttgtctcaa 92
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 71.9 bits (36), Expect = 3e-12
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 59 ctcaaatttgcccaaaaatgaatgtatctatttctaaaaaatgtctaaatacatgtaata 118
|||||||||| ||||| ||| |||||||||| |||||||| |||||| ||||||||||||
Sbjct: 95 ctcaaatttgtccaaatatggatgtatctatgtctaaaaagtgtctagatacatgtaata 36
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 65.9 bits (33), Expect = 2e-10
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 55 ttgtctcaaatttgcccaaaaatgaatgtatctatttctaaaaaatgtctaaatacatgt 114
||||||||||||| |||||| ||| |||||||||| ||||||| || || ||||||||
Sbjct: 99 ttgtctcaaattttcccaaatatggatgtatctatgcctaaaaagcgtttagatacatgt 40
Query: 115 aatatttcgacaa 127
||||||| |||||
Sbjct: 39 aatattttgacaa 27
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 63.9 bits (32), Expect = 6e-10
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatttc 92
||||||||||| ||||| | |||||| ||||||||||||| ||| |||| || || |
Sbjct: 5 tactccctccgacccatattacttgtcacaaatttgcccaattatggatgtgtcaatgtt 64
Query: 93 taaaaaatgtctaaatacatgtaatatttcgacaag 128
|||||| |||| ||||||||||||||||||||||
Sbjct: 65 taaaaagcatctagatacatgtaatatttcgacaag 100
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 61.9 bits (31), Expect = 3e-09
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 54 cttgtctcaaatttgcccaaaaatgaatgtatctatttctaaaaaatgtctaaatacatg 113
||||||||||||||||||||| | |||||||||| | |||||| ||||| ||||||
Sbjct: 99 cttgtctcaaatttgcccaaatgcggatgtatctatgtgtaaaaac-gtctagatacata 41
Query: 114 taatatttcgacaag 128
|||||||||||||||
Sbjct: 40 taatatttcgacaag 26
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 58.0 bits (29), Expect = 4e-08
Identities = 78/93 (83%), Gaps = 1/93 (1%)
Strand = Plus / Minus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctattt- 91
|||||||||||| ||||| | || |||||||||| | ||||||| | |||||||| |
Sbjct: 122 tactccctccgtcccatattaagtgactcaaatttgtctaaaaatggacgtatctatata 63
Query: 92 ctaaaaaatgtctaaatacatgtaatatttcga 124
|||||| | ||||| ||||||||||||||||||
Sbjct: 62 ctaaaatacgtctagatacatgtaatatttcga 30
>RF00906;MIR1122;AM180263.1/1164-1082 4513:Hordeum vulgare
Length = 83
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgtc 59
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccataattcttgtc 31
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 54.0 bits (27), Expect = 6e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 54 cttgtctcaaatttgcccaaaaatgaatgtatctatttctaaaaaatgtctaaatacatg 113
||||||||||| ||||||||| ||| |||||| ||| |||||| || || |||||||
Sbjct: 26 cttgtctcaaaattgcccaaatatggatgtatatatgcgtaaaaagcgtttagatacatg 85
Query: 114 taatatttcga 124
|||||||||||
Sbjct: 86 taatatttcga 96
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 54.0 bits (27), Expect = 6e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 69 cccaaaaatgaatgtatctatttctaaaaaatgtctaaatacatgtaatatttcgacaa 127
|||||| ||| |||||||||| ||||||| ||||| ||||||||||||||| |||||
Sbjct: 31 cccaaatatggatgtatctatgcataaaaaacgtctagatacatgtaatattttgacaa 89
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 31 actactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatcta 88
|||||||||||||| ||| ||||||||||| | ||||| | | | |||||||||||||
Sbjct: 3 actactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatcta 60
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatttc 92
|||||||||||| ||||| | || |||||||||| ||||| ||| ||||||||||
Sbjct: 5 tactccctccgtcccatattaagtgactcaaatttgtccaaatatggatgtatctatgct 64
Query: 93 taaaaaatgtctaaatacatgtaata 118
|||||| ||||| ||||||||||||
Sbjct: 65 taaaaagcgtctagatacatgtaata 90
>RF00906;MIR1122;EU660894.1/143713-143848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 50.1 bits (25), Expect = 1e-05
Identities = 68/81 (83%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctat-tt 91
|||||||||||||||| ||| |||| || ||||| ||||||||| ||||| |||| |
Sbjct: 132 tactccctccgttccaaaatacttgacttccatttgtccaaaaatggatgtacctatata 73
Query: 92 ctaaaaaatgtctaaatacat 112
|||||| ||||||| ||||||
Sbjct: 72 ctaaaacatgtctagatacat 52
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 48.1 bits (24), Expect = 4e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatcta 88
|||||||||||||||| ||| ||||||| ||||||| |||| || |||||||||
Sbjct: 130 tactccctccgttccaaaataagtgtctcagatttgccaaaaagtggatgtatcta 75
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 48.1 bits (24), Expect = 4e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatcta 88
|||||| ||||| ||| ||||||||||| ||||||| | | | |||||||||||||
Sbjct: 5 tactccttccgtcccaaaattcttgtcttaaatttgtctatatatgaatgtatcta 60
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 33 tactccctccgttccataattcttgtct 60
|||||||||||||||| |||||||||||
Sbjct: 132 tactccctccgttccaaaattcttgtct 105
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgtct 60
|||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgttccaaaattcttgtct 32
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 48.1 bits (24), Expect = 4e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 71 caaaaatgaatgtatctatttctaaaaaatgtctaaatacatgtaata 118
|||| ||| |||||||||| |||||||||||||| || |||||||||
Sbjct: 43 caaatatggatgtatctatgcctaaaaaatgtctagatgcatgtaata 90
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 48.1 bits (24), Expect = 4e-05
Identities = 55/64 (85%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 60 tcaaatttgcccaaaaatgaatgtatctatttctaaaaaatgtctaaatacatgtaatat 119
||||||| | ||||| |||| ||||||||| || ||||| ||||| |||||||||||||
Sbjct: 32 tcaaattcgtccaaatatgattgtatctatatc-aaaaagcgtctagatacatgtaatat 90
Query: 120 ttcg 123
||||
Sbjct: 91 ttcg 94
>RF00906;MIR1122;AK252407.1/1225-1338 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 114
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgtc 59
|||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgttcaataattcttgtc 31
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 46.1 bits (23), Expect = 2e-04
Identities = 78/95 (82%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcccaaaaatgaatgtatctatttc 92
||||||||| || ||||| | ||||||| |||||| ||||| || |||||| ||| |
Sbjct: 5 tactccctctgtcccatattaattgtctcgaatttgtccaaatatagatgtatttatacc 64
Query: 93 taaaaaatgtctaaatacatgtaatatttcgacaa 127
|||||| |||| |||||||||||||||||||||
Sbjct: 65 taaaaag-gtctggatacatgtaatatttcgacaa 98
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 31 actactccctccgttccataattcttgtct 60
|||||||||||||| ||| |||||||||||
Sbjct: 103 actactccctccgtcccaaaattcttgtct 74
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 33 tactccctccgttccataattcttgtctcaaatttgcc 70
|||| ||||||||||| ||||||||||| | |||||||
Sbjct: 131 tacttcctccgttccaaaattcttgtcttagatttgcc 94
