miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAKN02051949.1/133347-133425 10141:Cavia
porcellus (domestic guinea pig)
Length = 79
Score = 117 bits (59), Expect = 2e-26
Identities = 75/79 (94%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 ggtacctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacaca 60
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 ggtacctgaagagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacaca 59
Query: 61 gatggcctgttttcagtac 79
|||||||||| ||||||||
Sbjct: 60 gatggcctgtcttcagtac 78
>RF00641;mir-154;AAQR01664935.1/16813-16890 30611:Otolemur
garnettii (small-eared galago)
Length = 78
Score = 115 bits (58), Expect = 9e-26
Identities = 65/66 (98%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 7 tgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacagatggc 66
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7 tgagaagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacacagatggc 65
Query: 67 ctgttt 72
||||||
Sbjct: 66 ctgttt 71
>RF00641;mir-154;ABRQ01054379.1/507-585 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 99.6 bits (50), Expect = 5e-21
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 7 tgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacagatggc 66
|||| ||||| ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 7 tgaggagaggctgtctgtgatgagttcgcttt-atcaatgacgaatataacacagatggc 65
Query: 67 ctgttttcagtacc 80
||||| ||||||||
Sbjct: 66 ctgttctcagtacc 79
>RF00641;mir-154;AAYZ01254085.1/11201-11278 9978:Ochotona princeps
(American pika)
Length = 78
Score = 97.6 bits (49), Expect = 2e-20
Identities = 65/69 (94%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 6 ctgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacagatgg 65
||||| ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct: 5 ctgaggagaggttgtctgtgatgagttcgctgt-attaatgtcgaatataacacagatgg 63
Query: 66 cctgttttc 74
|||||||||
Sbjct: 64 cctgttttc 72
>RF00641;mir-154;AAGW01274484.1/405-482 9986:Oryctolagus cuniculus
(rabbit)
Length = 78
Score = 87.7 bits (44), Expect = 2e-17
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 13 gaggttgtctgtgatgagttcgcttttattaatgacgaatataacacagatggcctgttt 72
|||||||||||||||||||||||| | ||||| | |||||||||||||||||||||||||
Sbjct: 12 gaggttgtctgtgatgagttcgctgt-attaaagccgaatataacacagatggcctgttt 70
Query: 73 tcag 76
||||
Sbjct: 71 tcag 74
>RF00641;mir-154;AAGV020430602.1/10-84 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 75
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/60 (95%), Gaps = 3/60 (5%)
Strand = Plus / Plus
Query: 18 tgtctgtgatgagttcgcttttattaatgacgaatataacacagatggcctgttttcagt 77
||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct: 16 tgtctgtgatgagttcgcttt-atta-tgacgaatata-cacagatggcctgttttcagt 72
