miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28657_hsa-mir-450a-1:mirbase
Length = 91
Score = 165 bits (83), Expect = 7e-42
Identities = 89/91 (97%)
Strand = Plus / Plus
Query: 1 aaacgatactaaactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaa 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 aaacgatactaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaa 60
Query: 61 cattttgcatgtatagtttggtatcaatata 91
||||||||||||||||||| |||||||||||
Sbjct: 61 cattttgcatgtatagttttgtatcaatata 91
>30379_ptr-mir-450a-1:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 aaacgatactaaactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaa 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 aaacgatactaaactgtttttgcgatgtgttcctaatatgcactataaatatattgggaa 60
Query: 61 cattttgcatgtatagtttggtatcaatat 90
||||||||||||||||||| ||||||||||
Sbjct: 61 cattttgcatgtatagttttgtatcaatat 90
>27909_mml-mir-450a-1:mirbase
Length = 91
Score = 141 bits (71), Expect = 1e-34
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 5 gatactaaactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaacatt 64
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 5 gatactaaactgtttttgcgatgtgttcctaatatgtactataaatatattgggaacatt 64
Query: 65 ttgcatgtatagtttggtatcaatata 91
|||||||| |||||| |||||||||||
Sbjct: 65 ttgcatgtgtagttttgtatcaatata 91
>27182_eca-mir-450a:mirbase
Length = 91
Score = 117 bits (59), Expect = 1e-27
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaacattttgc 68
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 9 ctaaactgtttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgc 68
Query: 69 atgtatagtttggtatcaatata 91
||| || |||| |||||||||||
Sbjct: 69 atgcatggttttgtatcaatata 91
>33382_bta-mir-450-1:mirbase
Length = 82
Score = 101 bits (51), Expect = 8e-23
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcctaatatgcacaataaatatattgggaacattttgcatgtatag 76
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |
Sbjct: 5 tttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgcatgcatgg 64
Query: 77 tttggtatcaatata 91
||| |||||||||||
Sbjct: 65 ttttgtatcaatata 79
>34097_ssc-mir-450a:mirbase
Length = 106
Score = 101 bits (51), Expect = 8e-23
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaacattttgc 68
|||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 19 ctaaactggttttgcgatgtgttcctaatatgcagtataaatatattgggagcattttgc 78
Query: 69 atgtatagtttggtatcaatata 91
||| || |||| |||||| ||||
Sbjct: 79 atgcatggttttgtatcactata 101
>26848_cfa-mir-450a:mirbase
Length = 91
Score = 95.6 bits (48), Expect = 5e-21
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 12 aactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaacattttgcatg 71
||||||||||||||||||||||||||||||| || || ||||||||| |||||||||||
Sbjct: 12 aactgtttttgcgatgtgttcctaatatgcagtatgaacatattgggagcattttgcatg 71
Query: 72 tatagtttggtatcaatata 91
|| |||| |||||||||||
Sbjct: 72 catggttttgtatcaatata 91
>27910_mml-mir-450a-2:mirbase
Length = 100
Score = 89.7 bits (45), Expect = 3e-19
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaacattttgc 68
||||||| |||||||||||||||||||||||| | |||||| ||||||| |||||||||
Sbjct: 14 ctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattggggacattttgc 73
Query: 69 atgtatagtttggtatcaata 89
|| ||||||| |||||||||
Sbjct: 74 attcatagttttgtatcaata 94
>28658_hsa-mir-450a-2:mirbase
Length = 100
Score = 89.7 bits (45), Expect = 3e-19
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaacattttgc 68
||||||| |||||||||||||||||||||||| | |||||| ||||||| |||||||||
Sbjct: 14 ctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattggggacattttgc 73
Query: 69 atgtatagtttggtatcaata 89
|| ||||||| |||||||||
Sbjct: 74 attcatagttttgtatcaata 94
>30380_ptr-mir-450a-2:mirbase
Length = 99
Score = 89.7 bits (45), Expect = 3e-19
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaacattttgc 68
||||||| |||||||||||||||||||||||| | |||||| ||||||| |||||||||
Sbjct: 14 ctaaactatttttgcgatgtgttcctaatatgtaatataaatgtattggggacattttgc 73
Query: 69 atgtatagtttggtatcaata 89
|| ||||||| |||||||||
Sbjct: 74 attcatagttttgtatcaata 94
>33381_bta-mir-450:mirbase
Length = 92
Score = 87.7 bits (44), Expect = 1e-18
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaacattttgc 68
||||||| |||||||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct: 13 ctaaactatttttgcgatgtgttcctaatatgtaatctaaatgtattgggaacattttgc 72
Query: 69 atgtatagtttggtatcaat 88
|| ||||||| ||||||||
Sbjct: 73 attcatagttttgtatcaat 92
>27186_eca-mir-451a:mirbase
Length = 89
Score = 83.8 bits (42), Expect = 2e-17
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 12 aactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaacattttgcatg 71
|||| |||||||||||||||||||||| | | |||||| |||||||||||||||||||
Sbjct: 12 aactatttttgcgatgtgttcctaatacgtaatataaatgtattgggaacattttgcatt 71
Query: 72 tatagtttggtatcaata 89
||||||| |||||||||
Sbjct: 72 catagttttgtatcaata 89
>32080_mmu-mir-450a-1:mirbase
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 5 gatactaaactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaacatt 64
|||||| | ||||||||||||||||||||||||||| | |||| |||||||||||||||
Sbjct: 5 gatactgagctgtttttgcgatgtgttcctaatatgtgctataattatattgggaacatt 64
Query: 65 ttgcat 70
||||||
Sbjct: 65 ttgcat 70
>31011_ppy-mir-450a-2:mirbase
Length = 100
Score = 79.8 bits (40), Expect = 3e-16
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 9 ctaaactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaacattttgc 68
||||||| |||||||||||||||||||||| | | |||||| ||||||| |||||||||
Sbjct: 14 ctaaactatttttgcgatgtgttcctaatacgtaatataaatgtattggggacattttgc 73
Query: 69 atgtatagtttggtatcaat 88
|| ||||||| ||||||||
Sbjct: 74 attcatagttttgtatcaat 93
>32918_rno-mir-450a:mirbase
Length = 91
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 14 ctgtttttgcgatgtgttcctaatatgcacaataaatatattgggaacattttgcatgta 73
|||||||||||||||||||||||| || | | || ||||||||||||||||||||| |
Sbjct: 14 ctgtttttgcgatgtgttcctaatgtgtgctacaattatattgggaacattttgcataaa 73
Query: 74 tagttt 79
||||||
Sbjct: 74 tagttt 79
>34100_ssc-mir-450c:mirbase
Length = 81
Score = 61.9 bits (31), Expect = 7e-11
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 8 actaaactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaacattttg 67
|||||||| |||||||||||||||||||||| | | ||| | ||||||||||||||||
Sbjct: 4 actaaactatttttgcgatgtgttcctaatacgtaatctaagtgtattgggaacattttg 63
Query: 68 cat 70
|||
Sbjct: 64 cat 66
>34101_ssc-mir-450c:mirbase
Length = 81
Score = 61.9 bits (31), Expect = 7e-11
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 8 actaaactgtttttgcgatgtgttcctaatatgcacaataaatatattgggaacattttg 67
|||||||| |||||||||||||||||||||| | | ||| | ||||||||||||||||
Sbjct: 4 actaaactatttttgcgatgtgttcctaatacgtaatctaagtgtattgggaacattttg 63
Query: 68 cat 70
|||
Sbjct: 64 cat 66
>32081_mmu-mir-450a-2:mirbase
Length = 69
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 12 aactgtttttgcgatgtgttcctaatatgcacaataaatatattggg 58
|||| |||||||||||||||||||||||| || || | |||||||||
Sbjct: 2 aactatttttgcgatgtgttcctaatatgtactatgagtatattggg 48
>34098_ssc-mir-450b:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 7e-08
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcct-aatatgcacaataaatatattgggaacattttgcatgtata 75
||||||| || ||||||| |||||| | |||| ||||||||||||||||||||| |||
Sbjct: 8 tttttgcaatatgttcctgaatatgtaatataagtatattgggaacattttgcatccata 67
Query: 76 gtttggtatc 85
|||| |||||
Sbjct: 68 gttttgtatc 77
>34099_ssc-mir-450b:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 7e-08
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 17 tttttgcgatgtgttcct-aatatgcacaataaatatattgggaacattttgcatgtata 75
||||||| || ||||||| |||||| | |||| ||||||||||||||||||||| |||
Sbjct: 8 tttttgcaatatgttcctgaatatgtaatataagtatattgggaacattttgcatccata 67
Query: 76 gtttggtatc 85
|||| |||||
Sbjct: 68 gttttgtatc 77
>32082_mmu-mir-450b:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 52 tattgggaacattttgcatgtatagtttggtatc 85
|||||||||||||||||||| ||| ||| |||||
Sbjct: 49 tattgggaacattttgcatgcataattttgtatc 82
>32083_mmu-mir-450b:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 52 tattgggaacattttgcatgtatagtttggtatc 85
|||||||||||||||||||| ||| ||| |||||
Sbjct: 49 tattgggaacattttgcatgcataattttgtatc 82
>27183_eca-mir-450b:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 52 tattgggaacattttgcatgtatagtttggtat 84
||||||||||||||||||| ||||||| ||||
Sbjct: 47 tattgggaacattttgcatccatagttttgtat 79
>27184_eca-mir-450b:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 52 tattgggaacattttgcatgtatagtttggtat 84
||||||||||||||||||| ||||||| ||||
Sbjct: 47 tattgggaacattttgcatccatagttttgtat 79
