miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28675_hsa-mir-487a:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
Query: 61 acatccagtttttcagtatc 80
||||||||||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>30390_ptr-mir-487a:mirbase
Length = 79
Score = 149 bits (75), Expect = 3e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 2 gtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggga 61
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gtacttgaagagtggttatccctgctgtgttcgctgaatttatgacgaatcatacaggga 60
Query: 62 catccagtttttcagtatc 80
|||||||||||||||||||
Sbjct: 61 catccagtttttcagtatc 79
>26856_cfa-mir-487a:mirbase
Length = 80
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 61 acatccagtttttcagtatc 80
||||||||||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>27192_eca-mir-487a:mirbase
Length = 80
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 61 acatccagtttttcagtatc 80
||||||||||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>33392_bta-mir-487a:mirbase
Length = 80
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 61 acatccagtttttcagtatc 80
||||||||||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>33852_oar-mir-487a:mirbase
Length = 103
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 11 ggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacaggg 70
Query: 61 acatccagtttttcagtatc 80
||||||||||||||||||||
Sbjct: 71 acatccagtttttcagtatc 90
>33853_oar-mir-487a:mirbase
Length = 103
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 11 ggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacaggg 70
Query: 61 acatccagtttttcagtatc 80
||||||||||||||||||||
Sbjct: 71 acatccagtttttcagtatc 90
>27924_mml-mir-487a:mirbase
Length = 80
Score = 127 bits (64), Expect = 1e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 ggtacttggagagtggtcatccctgctgtgttcgctttgtttatgacgaatcatacaggg 60
Query: 61 acatccagtttttcagtatc 80
||||||||||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>32931_rno-mir-487b:mirbase
Length = 82
Score = 71.9 bits (36), Expect = 6e-14
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||| |||||||||||||||| | ||||||| | ||||| |||||| |||||||
Sbjct: 2 ggtacttggagagtggttatccctgtcctcttcgcttcacttatgccgaatcgtacaggg 61
Query: 61 acatccagtttttcagtatc 80
|||||| ||||||||||||
Sbjct: 62 tcatccactttttcagtatc 81
>27193_eca-mir-487b:mirbase
Length = 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||| |||||||||||||||| |||||| || | ||| | |||||| |||||||
Sbjct: 3 ggtacttggagagtggttatccctgtcctgttcgttttaattacgtcgaatcgtacaggg 62
Query: 61 acatccagtttttcagtatc 80
|||||| ||||||||||||
Sbjct: 63 tcatccactttttcagtatc 82
>32176_mmu-mir-487b:mirbase
Length = 82
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||| |||||||||||||||| | ||||||| | | ||| |||||| |||||||
Sbjct: 2 ggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacaggg 61
Query: 61 acatccagtttttcagtatc 80
|||||| ||||||||||||
Sbjct: 62 tcatccactttttcagtatc 81
>33393_bta-mir-487b:mirbase
Length = 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||| |||||||||||||||| |||||| || | | ||| |||||| |||||||
Sbjct: 3 ggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 62
Query: 61 acatccagtttttcagtatc 80
|||||| ||||||||||||
Sbjct: 63 tcatccactttttcagtatc 82
>34107_ssc-mir-487b:mirbase
Length = 78
Score = 60.0 bits (30), Expect = 2e-10
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 3 tacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacagggac 62
|||||| |||||||||||||||| |||||| || | | ||| |||||| ||||||| |
Sbjct: 1 tacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagggtc 60
Query: 63 atccagtttttcagtatc 80
||||| ||||||||||||
Sbjct: 61 atccactttttcagtatc 78
>28676_hsa-mir-487b:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||| |||||||||||||||| |||||| || | ||| |||||| |||||||
Sbjct: 3 ggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacaggg 62
Query: 61 acatccagtttttcagtatc 80
|||||| ||||||||||||
Sbjct: 63 tcatccactttttcagtatc 82
>30391_ptr-mir-487b:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 4e-09
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||| |||||||||||||||| |||||| || | ||| |||||| |||||||
Sbjct: 2 ggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacaggg 61
Query: 61 acatccagtttttcagtatc 80
|||||| ||||||||||||
Sbjct: 62 tcatccactttttcagtatc 81
>31024_ppy-mir-487b:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||| |||||||||||||||| |||||| || | ||| |||||| |||||||
Sbjct: 3 ggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacaggg 62
Query: 61 acatccagtttttcagtatc 80
|||||| ||||||||||||
Sbjct: 63 tcatccactttttcagtatc 82
>27225_eca-mir-539:mirbase
Length = 78
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 17 ttatccctgctgtgttcgcttaatttatgacgaatcatacagggaca 63
|||||| |||||||||||||| |||| ||| |||||||||| |||||
Sbjct: 16 ttatccttgctgtgttcgctttatttgtgatgaatcatacaaggaca 62
>27989_mml-mir-539:mirbase
Length = 78
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 17 ttatccctgctgtgttcgcttaatttatgacgaatcatacagggaca 63
|||||| || ||||||||||| |||||||| |||||||||| |||||
Sbjct: 16 ttatccttggtgtgttcgctttatttatgatgaatcatacaaggaca 62
>28787_hsa-mir-539:mirbase
Length = 78
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 17 ttatccctgctgtgttcgcttaatttatgacgaatcatacagggaca 63
|||||| || ||||||||||| |||||||| |||||||||| |||||
Sbjct: 16 ttatccttggtgtgttcgctttatttatgatgaatcatacaaggaca 62
>30466_ptr-mir-539:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 17 ttatccctgctgtgttcgcttaatttatgacgaatcatacagggaca 63
|||||| || ||||||||||| |||||||| |||||||||| |||||
Sbjct: 15 ttatccttggtgtgttcgctttatttatgatgaatcatacaaggaca 61
>31126_ppy-mir-539:mirbase
Length = 78
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 17 ttatccctgctgtgttcgcttaatttatgacgaatcatacagggaca 63
|||||| || ||||||||||| |||||||| |||||||||| |||||
Sbjct: 16 ttatccttggtgtgttcgctttatttatgatgaatcatacaaggaca 62
>27765_mml-mir-154:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcataca 57
|||||||||||| |||||||| || || ||||||| |||| ||||||||||||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
>28220_mne-mir-154:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcataca 57
|||||||||||| |||||||| || || ||||||| |||| ||||||||||||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
>28312_ggo-mir-154:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcataca 57
|||||||||||| |||||||| || || ||||||| |||| ||||||||||||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
>28481_hsa-mir-154:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcataca 57
|||||||||||| |||||||| || || ||||||| |||| ||||||||||||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
>30101_ppa-mir-154:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcataca 57
|||||||||||| |||||||| || || ||||||| |||| ||||||||||||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
>30249_ptr-mir-154:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcataca 57
|||||||||||| |||||||| || || ||||||| |||| ||||||||||||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
>30863_ppy-mir-154:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcataca 57
|||||||||||| |||||||| || || ||||||| |||| ||||||||||||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
>27925_mml-mir-487b:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||| |||||||||||||||| |||||| || | || |||||| |||||||
Sbjct: 3 ggtacttggagagtggttatccctgtcctgttcgttttgctcgtgtcgaatcgtacaggg 62
Query: 61 acatccagtttttcagtatc 80
|||||| ||||||||||||
Sbjct: 63 tcatccactttttcagtatc 82
>33854_oar-mir-487b:mirbase
Length = 106
Score = 48.1 bits (24), Expect = 9e-07
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||| |||||||||||||||| |||||| || | | ||| |||||| |||||||
Sbjct: 12 ggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 71
Query: 61 acatccagtttt 72
|||||| ||||
Sbjct: 72 tcatccactttt 83
>33855_oar-mir-487b:mirbase
Length = 106
Score = 48.1 bits (24), Expect = 9e-07
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
|||||||| |||||||||||||||| |||||| || | | ||| |||||| |||||||
Sbjct: 12 ggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 71
Query: 61 acatccagtttt 72
|||||| ||||
Sbjct: 72 tcatccactttt 83
>32046_mmu-mir-376b:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 49 aatcatacagggacatccagtttttcagtatc 80
||||||| ||| ||||||| ||||||||||||
Sbjct: 50 aatcatagaggaacatccactttttcagtatc 81
>32890_rno-mir-376b:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 49 aatcatacagggacatccagtttttcagtatc 80
||||||| ||| ||||||| ||||||||||||
Sbjct: 52 aatcatagaggaacatccactttttcagtatc 83
>32891_rno-mir-376b:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 49 aatcatacagggacatccagtttttcagtatc 80
||||||| ||| ||||||| ||||||||||||
Sbjct: 52 aatcatagaggaacatccactttttcagtatc 83
>33411_bta-mir-539:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 9e-04
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 17 ttatccctgctgtgttcgcttaatttatgacgaatcatacagggaca 63
|||||| || ||||||||||| |||| || |||||||||| |||||
Sbjct: 16 ttatccttggtgtgttcgctttatttgggatgaatcatacaaggaca 62
