miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30407_ptr-mir-503:mirbase
Length = 70
Score = 131 bits (66), Expect = 7e-32
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgattggtgctctggagtattgtttccg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggagtattgtttccg 60
Query: 61 ctgccagggt 70
||||||||||
Sbjct: 61 ctgccagggt 70
>28700_hsa-mir-503:mirbase
Length = 71
Score = 125 bits (63), Expect = 4e-30
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgattggtgctctggagtattgtttccg 60
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 1 tgccctagcagcgggaacagttctgcagtgagcgatcggtgctctggggtattgtttccg 60
Query: 61 ctgccagggta 71
|||||||||||
Sbjct: 61 ctgccagggta 71
>27945_mml-mir-503:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgattggtgctctggagtattgtttccg 60
|||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct: 1 tgccctagcagcgggaacagttctgcagtgagtgatcagtactctggagtattgtttccg 60
Query: 61 ctgccagggta 71
|||||||||||
Sbjct: 61 ctgccagggta 71
>32943_rno-mir-503:mirbase
Length = 71
Score = 101 bits (51), Expect = 6e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgattggtgctctggagtattgtttccg 60
||||||||||||||||||||| |||||||||| | ||||||| |||||||||||||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgagtgtttggtgccctggagtattgtttccg 60
Query: 61 ctgccagggta 71
||||| |||||
Sbjct: 61 ctgcctgggta 71
>32191_mmu-mir-503:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgattggtgctctggagtattgtttccg 60
||||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgagtgtttggtgccctggagtattgtttcca 60
Query: 61 ctgccagggta 71
||||| |||||
Sbjct: 61 ctgcctgggta 71
>27215_eca-mir-503:mirbase
Length = 71
Score = 89.7 bits (45), Expect = 2e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgattggtgctctggagtattgtttccg 60
||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| | |
Sbjct: 1 tgccctagcagcgggaacagtactgcagtgggcgatcggtgctctggagtattgttcctg 60
Query: 61 ctgcc 65
|||||
Sbjct: 61 ctgcc 65
>34115_ssc-mir-503:mirbase
Length = 109
Score = 81.8 bits (41), Expect = 6e-17
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 tgccctagcagcgggaacagttctgcagtgagcgattggtgctctggagtattgtttccg 60
||||||||||||||||||||| |||||||| ||||| ||| |||||| |||||||||| |
Sbjct: 17 tgccctagcagcgggaacagtactgcagtgggcgatcggtactctggggtattgtttctg 76
Query: 61 ctgcc 65
|||||
Sbjct: 77 ctgcc 81
>26870_cfa-mir-503:mirbase
Length = 63
Score = 71.9 bits (36), Expect = 6e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 6 tagcagcgggaacagttctgcagtgagcgattggtgctctggagtattgtttccgctgcc 65
|||||||||||||||| |||||||| || || |||| |||||||||||||||| ||||||
Sbjct: 1 tagcagcgggaacagtactgcagtgggcaatcggtgttctggagtattgtttctgctgcc 60
