miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 135 bits (68), Expect = 2e-31
Identities = 102/112 (91%), Gaps = 1/112 (0%)
Strand = Plus / Minus
Query: 23 gtactccctccgatcctaaatttttgtctcaaatttgcccaaatatggatgtatctattc 82
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtactccctccgatc-taaattcttgtctcaaatttgcccaaatatggatgtatctattc 63
Query: 83 ataaaaagtgtctaaatacatgtcatattttgacaacaatttaagatcggag 134
||||| | ||||| |||||||| |||||| ||||| |||||| ||||||||
Sbjct: 62 ttaaaacgcgtctagatacatgtaatatttcgacaataatttaggatcggag 11
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 gtactccctccgatcctaaatttttgtc 50
|||||||||||||||||||||| |||||
Sbjct: 4 gtactccctccgatcctaaattattgtc 31
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 133 bits (67), Expect = 7e-31
Identities = 97/107 (90%)
Strand = Plus / Minus
Query: 24 tactccctccgatcctaaatttttgtctcaaatttgcccaaatatggatgtatctattca 83
||||||||| ||||||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct: 121 tactccctctgatcctaaattcttgactcaaatttgcccaaatatggatatatctattct 62
Query: 84 taaaaagtgtctaaatacatgtcatattttgacaacaatttaagatc 130
||||||| ||||| |||||||| |||||| |||||||||||| ||||
Sbjct: 61 taaaaagcgtctagatacatgtaatatttcgacaacaatttaggatc 15
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 103 bits (52), Expect = 6e-22
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 24 tactccctccgatcctaaatttttgtctcaaatttgcccaaatatggatgtatctattca 83
||||||||||| ||| |||| |||||||||| |||| |||| |||||||||||||||||
Sbjct: 5 tactccctccgttccataattcttgtctcaaagttgctcaaaaatggatgtatctattca 64
Query: 84 taaaaagtgtctaaatacatgtcatattttgacaacaatt 123
||||||||||||| |||||||| | |||| ||||| ||||
Sbjct: 65 taaaaagtgtctagatacatgtaagatttcgacaagaatt 104
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 103 bits (52), Expect = 6e-22
Identities = 88/100 (88%)
Strand = Plus / Minus
Query: 24 tactccctccgatcctaaatttttgtctcaaatttgcccaaatatggatgtatctattca 83
||||||||||| ||| |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 121 tactccctccgttccataattcttgtctcaaatttgcccaaaattggatgtatctattcc 62
Query: 84 taaaaagtgtctaaatacatgtcatattttgacaacaatt 123
||||||| ||||| |||||||| |||||| ||||| ||||
Sbjct: 61 taaaaagcgtctagatacatgtaatatttcgacaagaatt 22
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 95.6 bits (48), Expect = 2e-19
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 24 tactccctccgatcctaaatttttgtctcaaatttgcccaaatatggatgtatctattca 83
||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5 tactccctccgttccataatttttgtctcaaatttgcccaaaaatggatgtatctattcc 64
Query: 84 taaaaagtgtctaaatacatgtcatattttgacaacaatt 123
||||| | || || ||||||| |||||| ||||| ||||
Sbjct: 65 taaaaggcgtttagatacatgcaatatttcgacaagaatt 104
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 95.6 bits (48), Expect = 2e-19
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 24 tactccctccgatcctaaatttttgtctcaaatttgcccaaatatggatgtatctattca 83
||||||||||| | | |||| ||||||||||||||| |||| || ||||||||||||
Sbjct: 5 tactccctccgtttcataattcttgtctcaaatttgctcaaaaatagatgtatctatttc 64
Query: 84 taaaaagtgtctaaatacatgtcatattttgacaacaatt 123
||||||||||||| |||||||| |||||||||||| ||||
Sbjct: 65 taaaaagtgtctagatacatgtaatattttgacaagaatt 104
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 91.7 bits (46), Expect = 2e-18
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 46 ttgtctcaaatttgcccaaatatggatgtatctattcataaaaagtgtctaaatacatgt 105
|||||||||||||||||| |||||||||||||||| | ||||||| ||||| ||||||||
Sbjct: 27 ttgtctcaaatttgcccagatatggatgtatctatgcctaaaaagcgtctagatacatgt 86
Query: 106 catattttgacaac 119
|||||| ||||||
Sbjct: 87 aatatttcgacaac 100
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 89.7 bits (45), Expect = 9e-18
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 46 ttgtctcaaatttgcccaaatatggatgtatctattcataaaaagtgtctaaatacatgt 105
||||||||||||| ||||||||||||||||||||| | ||||||| || || ||||||||
Sbjct: 99 ttgtctcaaattttcccaaatatggatgtatctatgcctaaaaagcgtttagatacatgt 40
Query: 106 catattttgacaa 118
||||||||||||
Sbjct: 39 aatattttgacaa 27
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 89.7 bits (45), Expect = 9e-18
Identities = 78/89 (87%)
Strand = Plus / Minus
Query: 24 tactccctccgatcctaaatttttgtctcaaatttgcccaaatatggatgtatctattca 83
||||||||||| || |||| |||||||||||||| ||||| ||| ||||||||||||
Sbjct: 121 tactccctccgttcgataattcttgtctcaaatttgaccaaaaatgaatgtatctattcc 62
Query: 84 taaaaagtgtctaaatacatgtcatattt 112
||||||||||||| |||||||| ||||||
Sbjct: 61 taaaaagtgtctagatacatgtaatattt 33
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 85.7 bits (43), Expect = 1e-16
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 47 tgtctcaaatttgcccaaatatggatgtatctattcataaaaagtgtctaaatacatgtc 106
|||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||
Sbjct: 27 tgtctcaaatttgcccaaatatggatgtatctatacctaaaaagcatctagatacatgta 86
Query: 107 atattttgaca 117
|||||| ||||
Sbjct: 87 atatttcgaca 97
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 83.8 bits (42), Expect = 6e-16
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 22 tgtactccctccgatcctaaatttttgtctcaaatttgcccaaatatggatgtatctatt 81
|||||||| |||| ||| |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 123 tgtactccttccgttccataattcttgtctcaaatttgcccaaaaatggatgtatctatt 64
Query: 82 cataaaaagtgtctaaatacatgtcatattttgacaacaatt 123
| | | ||||||| |||||||| |||||| ||||| ||||
Sbjct: 63 ccttcgaggtgtctagatacatgtaatatttcgacaagaatt 22
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 77.8 bits (39), Expect = 4e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 60 cccaaatatggatgtatctattcataaaaagtgtctaaatacatgtcatattttgacaa 118
||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||
Sbjct: 31 cccaaatatggatgtatctatgcataaaaaacgtctagatacatgtaatattttgacaa 89
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 73.8 bits (37), Expect = 6e-13
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 41 aatttttgtctcaaatttgcccaaatatggatgtatctattcataaaaagtgtctaaata 100
|||| ||||||||||||||| |||| ||||||||||||||| ||||| | ||||| |||
Sbjct: 22 aattcttgtctcaaatttgctcaaagatggatgtatctatttctaaaatgcgtctagata 81
Query: 101 catgtcatattttgaca 117
||||| |||||| ||||
Sbjct: 82 catgtaatatttcgaca 98
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 73.8 bits (37), Expect = 6e-13
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 46 ttgtctcaaatttgcccaaatatggatgtatctattcataaaaagtgtctaaatacatgt 105
|||||||||||||||||||||| | ||||||||| ||||||||||||| ||||||||
Sbjct: 99 ttgtctcaaatttgcccaaatacgaatgtatctacgtgtaaaaagtgtctagatacatgt 40
Query: 106 catattttgacaa 118
|||||| |||||
Sbjct: 39 aatatttcgacaa 27
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 50 ctcaaatttgcccaaatatggatgtatctattcataaaaagtgtctaaatacatgt 105
|||||||||| |||||||||||||||||||| | ||||||| ||||| ||||||||
Sbjct: 31 ctcaaatttgtccaaatatggatgtatctatgcttaaaaagcgtctagatacatgt 86
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 50 ctcaaatttgcccaaatatggatgtatctattcataaaaagtgtctaaatacatgt 105
|||||||||| |||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 95 ctcaaatttgtccaaatatggatgtatctatgtctaaaaagtgtctagatacatgt 40
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 69.9 bits (35), Expect = 9e-12
Identities = 86/102 (84%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 24 tactccctccgatcctaaatttttgtctcaaatttgcccaaatatggatgtatctattca 83
||||||||||| ||| |||| |||||||||||| |||||| ||||||||||||||||
Sbjct: 5 tactccctccgttccataattcttgtctcaaattaacccaaaaatggatgtatctattcc 64
Query: 84 taaaaa--gtgtctaaatacatgtcatattttgacaacaatt 123
|||||| ||||| |||||||| |||||| ||||| ||||
Sbjct: 65 taaaaaacacgtctagatacatgtaatatttcgacaagaatt 106
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 69.9 bits (35), Expect = 9e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 46 ttgtctcaaatttgcccaaatatggatgtatctattcataaaaagtgtctaaatacatgt 105
|||||||||| |||||||||||||||||||| ||| | ||||||| || || ||||||||
Sbjct: 27 ttgtctcaaaattgcccaaatatggatgtatatatgcgtaaaaagcgtttagatacatgt 86
Query: 106 catattt 112
||||||
Sbjct: 87 aatattt 93
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 46 ttgtctcaaatttgcccaaatatggatgtatctattcataaaaagtgtctaaatacatgt 105
|||||||||||||| ||||||| | |||||||||| ||||||| ||||| ||||||||
Sbjct: 99 ttgtctcaaatttgtccaaatacgaatgtatctatgtgtaaaaagagtctagatacatgt 40
Query: 106 catattttgacaa 118
|||||| |||||
Sbjct: 39 aatatttcgacaa 27
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 46 ttgtctcaaatttgcccaaatatggatgtatctattcataaaaagtgtctaaatacatgt 105
|||||||||||||||||||||| | ||| |||||| ||||||| ||||| ||||||||
Sbjct: 99 ttgtctcaaatttgcccaaatacgaatgcatctatgtttaaaaagcgtctagatacatgt 40
Query: 106 catattttgacaa 118
|||||| |||||
Sbjct: 39 aatatttcgacaa 27
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 43 tttttgtctcaaatttgcccaaatatggatgtatctattcataaaaagtgtctaaataca 102
||||||||||||||||||||||| || ||||||||||| ||||||| ||||| |||||
Sbjct: 102 tttttgtctcaaatttgcccaaaattgaatgtatctattactaaaaagcgtctagataca 43
Query: 103 tgtcatattttgacaacaatt 123
|| || ||| ||||| ||||
Sbjct: 42 cgtaatgtttcgacaagaatt 22
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 24 tactccctccgatcctaaatttttgtctcaaatttgcccaaatatggatgtatctattca 83
||||||||||||||| | | |||||||||||||| |||||||| ||||||||||
Sbjct: 121 tactccctccgatccatattacttgtctcaaatttgatcaaatatgaatgtatctatgtt 62
Query: 84 taaaaagtgtctaaatacatgtcatattttgacaa 118
||||||||| ||| ||| |||| |||||| |||||
Sbjct: 61 taaaaagtgactagataaatgtaatatttcgacaa 27
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 41 aatttttgtctcaaatttgcccaaatatggatgtatctattcataaaaagtgtctaaata 100
|||| ||| ||| |||||| ||||| |||||||||| |||||||||||| ||||| |||
Sbjct: 22 aattcttggctcgaatttgtccaaaaatggatgtatatattcataaaaaacgtctagata 81
Query: 101 catgtcatattttgacaacaatt 123
||||| | |||| ||||| ||||
Sbjct: 82 catgtaagatttcgacaagaatt 104
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 54.0 bits (27), Expect = 5e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 22 tgtactccctccgatcctaaatttttgtctcaaatttgcccaaatatggatgtat 76
||||||||||||| || ||||| |||||| ||||||| | ||||||||||||||
Sbjct: 3 tgtactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtat 57
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 46 ttgtctcaaatttgcccaaatatggatgtatctat 80
||||||||||||||||||||| ||||||||||||
Sbjct: 98 ttgtctcaaatttgcccaaatgcggatgtatctat 64
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 54.0 bits (27), Expect = 5e-07
Identities = 75/90 (83%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 23 gtactccctccgatcctaaatttttgtctcaaatttgcccaaatatggatgtatctattc 82
|||||||||||| | | |||| ||||||||||||| ||||| |||||||||||||||
Sbjct: 4 gtactccctccgtttcataattcttgtctcaaattt--ccaaaaatggatgtatctattt 61
Query: 83 ataaaaagtgtctaaatacatgtcatattt 112
||||| | |||| |||||||| ||||||
Sbjct: 62 taaaaaaatatctagatacatgtaatattt 91
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 46 ttgtctcaaatttgcccaaatatggatgtatctattcataaaaagtgtctaaatacatgt 105
||||| ||||||||||||| ||||||||| || || ||||||| |||| ||||||||
Sbjct: 27 ttgtcacaaatttgcccaattatggatgtgtcaatgtttaaaaagcatctagatacatgt 86
Query: 106 catattttgacaa 118
|||||| |||||
Sbjct: 87 aatatttcgacaa 99
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 62 caaatatggatgtatctattcataaaaagtgtctaaatacatgt 105
||||||||||||||||||| | |||||| |||||| || |||||
Sbjct: 43 caaatatggatgtatctatgcctaaaaaatgtctagatgcatgt 86
>RF00906;MIR1122;EU730902.1/79802-79895 15368:Brachypodium
distachyon
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 gtactccctccgatcctaaatttttgtc 50
|||||||||||||||||||||| |||||
Sbjct: 4 gtactccctccgatcctaaattcttgtc 31
>RF00906;MIR1122;EU730902.1/30283-30160 15368:Brachypodium
distachyon
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 69/83 (83%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 41 aatttttgtctcaaatttgcccaaatatggatgtatctattcataaaaagtgtctaaata 100
|||| |||||||||||||||||||| || |||||| ||||| ||||||| || || ||
Sbjct: 22 aattcttgtctcaaatttgcccaaaaat-gatgtagctatttctaaaaagcgtttagatg 80
Query: 101 catgtcatattttgacaacaatt 123
||| | |||||| ||||| ||||
Sbjct: 81 catctgatatttcgacaagaatt 103
>RF00906;MIR1122;EU730895.1/40632-40541 15368:Brachypodium
distachyon
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 23 gtactccctccgatcctaaatttttgt 49
|||||||||||||||||||||| ||||
Sbjct: 4 gtactccctccgatcctaaattcttgt 30
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 22 tgtactccctccgatcctaaatttttgtctcaaatttgcccaaatatggatgtatcta 79
||||| ||||||| || ||||| |||||| ||||||| | ||||| |||||||||||
Sbjct: 133 tgtaccccctccgtcccaaaattcttgtcttaaatttgtctaaatacggatgtatcta 76
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 20 catgtactccctccgatcctaaatttttgtctcaaatttgcccaaatatggatgtatc 77
||||||||||||||| || ||||| |||||| | ||||| | ||||| |||||||||
Sbjct: 1 catgtactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 58
