miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
           distachyon
          Length = 126

 Score =  167 bits (84), Expect = 5e-41
 Identities = 111/120 (92%)
 Strand = Plus / Plus

                                                                       
Query: 11  aatactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaa 70
           |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| 
Sbjct: 3   aatactccctccgtcccatattaagtttcgaaatattacatgtatctagacgtattttag 62

                                                                       
Query: 71  tatatagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagta 130
           ||||||||||||||||| |||||||||||| |||||||||||| ||  ||||||||||||
Sbjct: 63  tatatagatacgtccatttttagacaaatttgagtcacttaatatgggacggagggagta 122



 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 9   taaatactccttccgtcccatattaagtg 37
           |||||||||| ||||||||||||||||||
Sbjct: 126 taaatactccctccgtcccatattaagtg 98




>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
           sylvaticum
          Length = 126

 Score =  123 bits (62), Expect = 7e-28
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                       
Query: 10  aaatactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtatttta 69
           ||||||||| ||||||||| |||||||| |    |||| ||||||||||||||| || ||
Sbjct: 2   aaatactccctccgtcccaaattaagtgactttctattacatgtatctagacgttttcta 61

                                                                       
Query: 70  atatatagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagt 129
            |||||||||||||||||||||||||||||| |||||||||||| ||  |||||||||||
Sbjct: 62  gtatatagatacgtccatatttagacaaatttgagtcacttaatatgggacggagggagt 121

             
Query: 130 ag 131
           ||
Sbjct: 122 ag 123




>RF00906;MIR1122;EU730895.1/70118-69993 15368:Brachypodium
           distachyon
          Length = 126

 Score =  115 bits (58), Expect = 2e-25
 Identities = 103/118 (87%)
 Strand = Plus / Plus

                                                                       
Query: 13  tactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaata 72
           |||||| |||||||||||||||||| |||||||||  ||||||||| || ||||||| ||
Sbjct: 5   tactccctccgtcccatattaagtgccgaaatattatatgtatctaaacatattttagta 64

                                                                     
Query: 73  tatagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagta 130
           ||||||||||| ||| ||||||||||||  ||||||||||| ||  | ||||||||||
Sbjct: 65  tatagatacgtacatttttagacaaatttaagtcacttaatatgggatggagggagta 122




>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
           distachyon
          Length = 124

 Score = 89.7 bits (45), Expect = 9e-18
 Identities = 88/101 (87%), Gaps = 1/101 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaata 72
           |||||| |||||||||||||||||||||||||||| |||||||||||| |  |||| |  
Sbjct: 120 tactccctccgtcccatattaagtgtcgaaatattacatgtatctagatg-ctttttagg 62

                                                    
Query: 73  tatagatacgtccatatttagacaaattcgagtcacttaat 113
           ||||||||| ||||||||| | |||||| ||| ||||||||
Sbjct: 61  tatagatacatccatatttgggcaaatttgagacacttaat 21




>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
           sylvaticum
          Length = 125

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 102/121 (84%), Gaps = 1/121 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  aaatactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtatttta 69
           ||||||||| |||||||| ||||||||| |    |||| |||||||||||||   |||||
Sbjct: 2   aaatactccctccgtcccgtattaagtgactttctattacatgtatctagacacttttta 61

                                                                       
Query: 70  atatatagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagt 129
             | |||||||| ||||||||| |||||||| |||||||||||| ||| |||||||||||
Sbjct: 62  g-acatagatacatccatatttggacaaatttgagtcacttaatatgagacggagggagt 120

            
Query: 130 a 130
           |
Sbjct: 121 a 121




>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
           sylvaticum
          Length = 124

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 98/116 (84%), Gaps = 2/116 (1%)
 Strand = Plus / Minus

                                                                       
Query: 15  ctccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaatata 74
           |||| |||||| ||||||||||| ||||||||| ||||||||||||||  ||||   |||
Sbjct: 118 ctccctccgtctcatattaagtgacgaaatattacatgtatctagacgcttttt--gata 61

                                                                   
Query: 75  tagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagta 130
           |||||||   ||||||| ||| |||| || ||||||||| ||| ||||||||||||
Sbjct: 60  tagatacaatcatatttggacgaatttgaatcacttaatatgagacggagggagta 5




>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
           sylvaticum
          Length = 125

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 99/118 (83%), Gaps = 1/118 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaata 72
           |||||| ||||||||||||||| || |    |||| ||||||||||||||  ||||||  
Sbjct: 121 tactccctccgtcccatattaattgactttctattacatgtatctagacgctttttaagc 62

                                                                     
Query: 73  tatagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagta 130
            |||||||| ||||||||| |||||||| |||||||||||| ||  ||||||||||||
Sbjct: 61  -atagatacatccatatttggacaaatttgagtcacttaatatgggacggagggagta 5



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 10 aaatactccttccgtcccatattaagtg 37
          ||||||||| ||||||||||||||||||
Sbjct: 2  aaatactccctccgtcccatattaagtg 29




>RF00906;MIR1122;EF059989.1/74343-74464 29664:Brachypodium
           sylvaticum
          Length = 122

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 64/73 (87%), Gaps = 1/73 (1%)
 Strand = Plus / Minus

                                                                       
Query: 20  tccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaatatatagat 79
           ||||||| |||||||||||| ||| ||| ||||||||||||||| ||||||  |||||||
Sbjct: 111 tccgtcctatattaagtgtcaaaacattacatgtatctagacgttttttaa-ctatagat 53

                        
Query: 80  acgtccatattta 92
           || ||||| ||||
Sbjct: 52  acatccatgttta 40




>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
           sylvaticum
          Length = 115

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 68/79 (86%), Gaps = 1/79 (1%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaata 72
           |||||| ||||  ||||||||| |||| ||||||| ||||||||||||||| |||| || 
Sbjct: 111 tactccctccgatccatattaattgtcaaaatattacatgtatctagacgt-tttttatg 53

                              
Query: 73  tatagatacgtccatattt 91
            |||||||| |||||||||
Sbjct: 52  catagatacatccatattt 34




>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
           distachyon
          Length = 125

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                            
Query: 12  atactccttccgtcccatattaagtgtcgaaatattgcatgtatctaga 60
           ||||||| |||| |||||||||  |||||||||||| ||||||||||||
Sbjct: 122 atactccctccgacccatattacttgtcgaaatattacatgtatctaga 74




>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
           sylvaticum
          Length = 124

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 98/120 (81%), Gaps = 2/120 (1%)
 Strand = Plus / Minus

                                                                       
Query: 11  aatactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaa 70
           |||||| | ||||| ||||||||| |||||||||||| |||||||| ||||   |||| |
Sbjct: 122 aatacttcctccgttccatattaattgtcgaaatattacatgtatccagac--cttttta 65

                                                                       
Query: 71  tatatagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagta 130
             |||| |||| || |||||| |||||||||||| || ||||| ||  || |||||||||
Sbjct: 64  ggtataaatacatctatatttggacaaattcgagacaattaatatgggacagagggagta 5




>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
           sylvaticum
          Length = 124

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 57/65 (87%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                       
Query: 36  tgtcgaaatattgcatgtatctagacgtattttaatatatagatacgtccatatttagac 95
           |||||||||||| ||||||||||||||  |||||| | |||||||| ||||||||| | |
Sbjct: 28  tgtcgaaatattacatgtatctagacgcgttttaaga-atagatacatccatatttgggc 86

                
Query: 96  aaatt 100
           |||||
Sbjct: 87  aaatt 91




>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
           sylvaticum
          Length = 125

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 62/72 (86%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                       
Query: 36  tgtcgaaatattgcatgtatctagacgtattttaatatatagatacgtccatatttagac 95
           |||||||||||| ||||||||||||||  |||||| | |||||||  ||||||||| | |
Sbjct: 28  tgtcgaaatattacatgtatctagacgctttttaaga-atagatatatccatatttgggc 86

                       
Query: 96  aaattcgagtca 107
           ||||| ||||||
Sbjct: 87  aaatttgagtca 98




>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
          distachyon
          Length = 125

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                            
Query: 36 tgtcgaaatattgcatgtatctagacgtatttta 69
          |||||||||||| |||||||||||||| ||||||
Sbjct: 98 tgtcgaaatattacatgtatctagacgcatttta 65




>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
           distachyon
          Length = 125

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 13  tactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacg 62
           |||||| ||||  ||||||||  |||||||||||| ||||||||||||||
Sbjct: 121 tactccctccgatccatattagttgtcgaaatattacatgtatctagacg 72




>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
           distachyon
          Length = 127

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 36  tgtcgaaatattgcatgtatctagacgtatttt 68
           |||||||||||| ||||||||||||||| ||||
Sbjct: 100 tgtcgaaatattacatgtatctagacgtgtttt 68




>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
           sylvaticum
          Length = 125

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 59/69 (85%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                       
Query: 36  tgtcgaaatattgcatgtatctagacgtattttaatatatagatacgtccatatttagac 95
           ||||||||| || ||||||||||||||| |||| ||  ||| |||| ||||| ||| |||
Sbjct: 98  tgtcgaaatcttacatgtatctagacgt-tttttatgaatatatacatccatttttggac 40

                    
Query: 96  aaattcgag 104
           |||||||||
Sbjct: 39  aaattcgag 31




>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
          distachyon
          Length = 125

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                         
Query: 13 tactccttccgtcccatattaagtgtcgaaatattgcatgtatctag 59
          |||||| |||| |||||||||  |||||||||||| ||| |||||||
Sbjct: 5  tactccctccgacccatattacttgtcgaaatattacatttatctag 51




>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
          distachyon
          Length = 125

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 36 tgtcgaaatattgcatgtatcta 58
          |||||||||||||||||||||||
Sbjct: 98 tgtcgaaatattgcatgtatcta 76




>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
          distachyon
          Length = 125

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 36 tgtcgaaatattgcatgtatctagacg 62
          |||||||||||| ||||||||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagacg 54




>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
          sylvaticum
          Length = 125

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 36 tgtcgaaatattgcatgtatctagacg 62
          |||||||||||| ||||||||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagacg 54




>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
           durum (durum wheat)
          Length = 136

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 73  tatagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagta 130
           ||||||||| ||| | ||||||||||||| |||||  || | || |||||||||||||
Sbjct: 62  tatagatacatccgtgtttagacaaattcaagtcaactattttggaacggagggagta 5




>RF00906;MIR1122;EU660894.1/143713-143848 4567:Triticum turgidum
           subsp. durum (durum wheat)
          Length = 136

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 50  atgtatctagacgtattttaatatatagatacgtccatatttagacaaat 99
           |||||||||||| | ||||| ||||||| ||| ||||| ||| |||||||
Sbjct: 52  atgtatctagacatgttttagtatataggtacatccatttttggacaaat 101




>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
          distachyon
          Length = 125

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 36 tgtcgaaatattgcatgtatctagac 61
          |||||||||||| |||||||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagac 53




>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
          sylvaticum
          Length = 125

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 36 tgtcgaaatattgcatgtatctagac 61
          |||||||||||| |||||||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagac 53




>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
          distachyon
          Length = 125

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 36 tgtcgaaatattgcatgtatctagac 61
          |||||||||||| |||||||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagac 53




>RF00906;MIR1122;AP008216.1/349835-349994 39947:Oryza sativa
           Japonica Group
          Length = 160

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 113 tgtgaaacggagggagtagctt 134
           ||||||||||||||||||||||
Sbjct: 139 tgtgaaacggagggagtagctt 160




>RF00906;MIR1122;AAAA02021768.1/34563-34436 39946:Oryza sativa
           Indica Group
          Length = 128

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 113 tgtgaaacggagggagtagctt 134
           ||||||||||||||||||||||
Sbjct: 22  tgtgaaacggagggagtagctt 1




>RF00906;MIR1122;AC145127.1/349994-349835 39947:Oryza sativa
           Japonica Group
          Length = 160

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 113 tgtgaaacggagggagtagctt 134
           ||||||||||||||||||||||
Sbjct: 22  tgtgaaacggagggagtagctt 1