miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 167 bits (84), Expect = 5e-41
Identities = 111/120 (92%)
Strand = Plus / Plus
Query: 11 aatactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaa 70
|||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 3 aatactccctccgtcccatattaagtttcgaaatattacatgtatctagacgtattttag 62
Query: 71 tatatagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagta 130
||||||||||||||||| |||||||||||| |||||||||||| || ||||||||||||
Sbjct: 63 tatatagatacgtccatttttagacaaatttgagtcacttaatatgggacggagggagta 122
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 9 taaatactccttccgtcccatattaagtg 37
|||||||||| ||||||||||||||||||
Sbjct: 126 taaatactccctccgtcccatattaagtg 98
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 123 bits (62), Expect = 7e-28
Identities = 107/122 (87%)
Strand = Plus / Plus
Query: 10 aaatactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtatttta 69
||||||||| ||||||||| |||||||| | |||| ||||||||||||||| || ||
Sbjct: 2 aaatactccctccgtcccaaattaagtgactttctattacatgtatctagacgttttcta 61
Query: 70 atatatagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagt 129
|||||||||||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct: 62 gtatatagatacgtccatatttagacaaatttgagtcacttaatatgggacggagggagt 121
Query: 130 ag 131
||
Sbjct: 122 ag 123
>RF00906;MIR1122;EU730895.1/70118-69993 15368:Brachypodium
distachyon
Length = 126
Score = 115 bits (58), Expect = 2e-25
Identities = 103/118 (87%)
Strand = Plus / Plus
Query: 13 tactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaata 72
|||||| |||||||||||||||||| ||||||||| ||||||||| || ||||||| ||
Sbjct: 5 tactccctccgtcccatattaagtgccgaaatattatatgtatctaaacatattttagta 64
Query: 73 tatagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagta 130
||||||||||| ||| |||||||||||| ||||||||||| || | ||||||||||
Sbjct: 65 tatagatacgtacatttttagacaaatttaagtcacttaatatgggatggagggagta 122
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 89.7 bits (45), Expect = 9e-18
Identities = 88/101 (87%), Gaps = 1/101 (0%)
Strand = Plus / Minus
Query: 13 tactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaata 72
|||||| |||||||||||||||||||||||||||| |||||||||||| | |||| |
Sbjct: 120 tactccctccgtcccatattaagtgtcgaaatattacatgtatctagatg-ctttttagg 62
Query: 73 tatagatacgtccatatttagacaaattcgagtcacttaat 113
||||||||| ||||||||| | |||||| ||| ||||||||
Sbjct: 61 tatagatacatccatatttgggcaaatttgagacacttaat 21
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 81.8 bits (41), Expect = 2e-15
Identities = 102/121 (84%), Gaps = 1/121 (0%)
Strand = Plus / Plus
Query: 10 aaatactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtatttta 69
||||||||| |||||||| ||||||||| | |||| ||||||||||||| |||||
Sbjct: 2 aaatactccctccgtcccgtattaagtgactttctattacatgtatctagacacttttta 61
Query: 70 atatatagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagt 129
| |||||||| ||||||||| |||||||| |||||||||||| ||| |||||||||||
Sbjct: 62 g-acatagatacatccatatttggacaaatttgagtcacttaatatgagacggagggagt 120
Query: 130 a 130
|
Sbjct: 121 a 121
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 81.8 bits (41), Expect = 2e-15
Identities = 98/116 (84%), Gaps = 2/116 (1%)
Strand = Plus / Minus
Query: 15 ctccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaatata 74
|||| |||||| ||||||||||| ||||||||| |||||||||||||| |||| |||
Sbjct: 118 ctccctccgtctcatattaagtgacgaaatattacatgtatctagacgcttttt--gata 61
Query: 75 tagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagta 130
||||||| ||||||| ||| |||| || ||||||||| ||| ||||||||||||
Sbjct: 60 tagatacaatcatatttggacgaatttgaatcacttaatatgagacggagggagta 5
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 75.8 bits (38), Expect = 1e-13
Identities = 99/118 (83%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 13 tactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaata 72
|||||| ||||||||||||||| || | |||| |||||||||||||| ||||||
Sbjct: 121 tactccctccgtcccatattaattgactttctattacatgtatctagacgctttttaagc 62
Query: 73 tatagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagta 130
|||||||| ||||||||| |||||||| |||||||||||| || ||||||||||||
Sbjct: 61 -atagatacatccatatttggacaaatttgagtcacttaatatgggacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 aaatactccttccgtcccatattaagtg 37
||||||||| ||||||||||||||||||
Sbjct: 2 aaatactccctccgtcccatattaagtg 29
>RF00906;MIR1122;EF059989.1/74343-74464 29664:Brachypodium
sylvaticum
Length = 122
Score = 65.9 bits (33), Expect = 1e-10
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 20 tccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaatatatagat 79
||||||| |||||||||||| ||| ||| ||||||||||||||| |||||| |||||||
Sbjct: 111 tccgtcctatattaagtgtcaaaacattacatgtatctagacgttttttaa-ctatagat 53
Query: 80 acgtccatattta 92
|| ||||| ||||
Sbjct: 52 acatccatgttta 40
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 61.9 bits (31), Expect = 2e-09
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 13 tactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaata 72
|||||| |||| ||||||||| |||| ||||||| ||||||||||||||| |||| ||
Sbjct: 111 tactccctccgatccatattaattgtcaaaatattacatgtatctagacgt-tttttatg 53
Query: 73 tatagatacgtccatattt 91
|||||||| |||||||||
Sbjct: 52 catagatacatccatattt 34
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 12 atactccttccgtcccatattaagtgtcgaaatattgcatgtatctaga 60
||||||| |||| ||||||||| |||||||||||| ||||||||||||
Sbjct: 122 atactccctccgacccatattacttgtcgaaatattacatgtatctaga 74
>RF00906;MIR1122;EF059989.1/223398-223521 29664:Brachypodium
sylvaticum
Length = 124
Score = 58.0 bits (29), Expect = 3e-08
Identities = 98/120 (81%), Gaps = 2/120 (1%)
Strand = Plus / Minus
Query: 11 aatactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacgtattttaa 70
|||||| | ||||| ||||||||| |||||||||||| |||||||| |||| |||| |
Sbjct: 122 aatacttcctccgttccatattaattgtcgaaatattacatgtatccagac--cttttta 65
Query: 71 tatatagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagta 130
|||| |||| || |||||| |||||||||||| || ||||| || || |||||||||
Sbjct: 64 ggtataaatacatctatatttggacaaattcgagacaattaatatgggacagagggagta 5
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 58.0 bits (29), Expect = 3e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 36 tgtcgaaatattgcatgtatctagacgtattttaatatatagatacgtccatatttagac 95
|||||||||||| |||||||||||||| |||||| | |||||||| ||||||||| | |
Sbjct: 28 tgtcgaaatattacatgtatctagacgcgttttaaga-atagatacatccatatttgggc 86
Query: 96 aaatt 100
|||||
Sbjct: 87 aaatt 91
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 36 tgtcgaaatattgcatgtatctagacgtattttaatatatagatacgtccatatttagac 95
|||||||||||| |||||||||||||| |||||| | ||||||| ||||||||| | |
Sbjct: 28 tgtcgaaatattacatgtatctagacgctttttaaga-atagatatatccatatttgggc 86
Query: 96 aaattcgagtca 107
||||| ||||||
Sbjct: 87 aaatttgagtca 98
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 36 tgtcgaaatattgcatgtatctagacgtatttta 69
|||||||||||| |||||||||||||| ||||||
Sbjct: 98 tgtcgaaatattacatgtatctagacgcatttta 65
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 13 tactccttccgtcccatattaagtgtcgaaatattgcatgtatctagacg 62
|||||| |||| |||||||| |||||||||||| ||||||||||||||
Sbjct: 121 tactccctccgatccatattagttgtcgaaatattacatgtatctagacg 72
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 36 tgtcgaaatattgcatgtatctagacgtatttt 68
|||||||||||| ||||||||||||||| ||||
Sbjct: 100 tgtcgaaatattacatgtatctagacgtgtttt 68
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 36 tgtcgaaatattgcatgtatctagacgtattttaatatatagatacgtccatatttagac 95
||||||||| || ||||||||||||||| |||| || ||| |||| ||||| ||| |||
Sbjct: 98 tgtcgaaatcttacatgtatctagacgt-tttttatgaatatatacatccatttttggac 40
Query: 96 aaattcgag 104
|||||||||
Sbjct: 39 aaattcgag 31
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 13 tactccttccgtcccatattaagtgtcgaaatattgcatgtatctag 59
|||||| |||| ||||||||| |||||||||||| ||| |||||||
Sbjct: 5 tactccctccgacccatattacttgtcgaaatattacatttatctag 51
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 36 tgtcgaaatattgcatgtatcta 58
|||||||||||||||||||||||
Sbjct: 98 tgtcgaaatattgcatgtatcta 76
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 36 tgtcgaaatattgcatgtatctagacg 62
|||||||||||| ||||||||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagacg 54
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 36 tgtcgaaatattgcatgtatctagacg 62
|||||||||||| ||||||||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagacg 54
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 73 tatagatacgtccatatttagacaaattcgagtcacttaatgtgaaacggagggagta 130
||||||||| ||| | ||||||||||||| ||||| || | || |||||||||||||
Sbjct: 62 tatagatacatccgtgtttagacaaattcaagtcaactattttggaacggagggagta 5
>RF00906;MIR1122;EU660894.1/143713-143848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 50 atgtatctagacgtattttaatatatagatacgtccatatttagacaaat 99
|||||||||||| | ||||| ||||||| ||| ||||| ||| |||||||
Sbjct: 52 atgtatctagacatgttttagtatataggtacatccatttttggacaaat 101
>RF00906;MIR1122;EU730894.1/127135-127259 15368:Brachypodium
distachyon
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 36 tgtcgaaatattgcatgtatctagac 61
|||||||||||| |||||||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagac 53
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 36 tgtcgaaatattgcatgtatctagac 61
|||||||||||| |||||||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagac 53
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 36 tgtcgaaatattgcatgtatctagac 61
|||||||||||| |||||||||||||
Sbjct: 28 tgtcgaaatattacatgtatctagac 53
>RF00906;MIR1122;AP008216.1/349835-349994 39947:Oryza sativa
Japonica Group
Length = 160
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 tgtgaaacggagggagtagctt 134
||||||||||||||||||||||
Sbjct: 139 tgtgaaacggagggagtagctt 160
>RF00906;MIR1122;AAAA02021768.1/34563-34436 39946:Oryza sativa
Indica Group
Length = 128
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 113 tgtgaaacggagggagtagctt 134
||||||||||||||||||||||
Sbjct: 22 tgtgaaacggagggagtagctt 1
>RF00906;MIR1122;AC145127.1/349994-349835 39947:Oryza sativa
Japonica Group
Length = 160
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 113 tgtgaaacggagggagtagctt 134
||||||||||||||||||||||
Sbjct: 22 tgtgaaacggagggagtagctt 1
