miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 83.8 bits (42), Expect = 5e-16
Identities = 49/50 (98%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 68 atgattttaccg-aagttatgcagttgctgcctcaagcttgctgcctccc 116
|||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 79 atgattttaccgcaagttatgcagttgctgcctcaagcttgctgcctccc 128
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 80 aagttatgcagttgctgcctcaagcttgctgcctcc 115
||||||||||||||||||||||||||||||||||||
Sbjct: 87 aagttatgcagttgctgcctcaagcttgctgcctcc 122
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 80 aagttatgcagttgctgcctcaagcttgctgcctccc 116
||||||||||||||||||||||||||| |||||||||
Sbjct: 87 aagttatgcagttgctgcctcaagcttcctgcctccc 123
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 86 tgcagttgctgcctcaagcttgctgcctccc 116
|||||||||||||||||||||||||||||||
Sbjct: 137 tgcagttgctgcctcaagcttgctgcctccc 167
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 80 aagttatgcagttgctgcctcaagcttgctgcctccc 116
||||| |||||||| ||||||||||||||||||||||
Sbjct: 125 aagttgtgcagttgttgcctcaagcttgctgcctccc 161
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 80 aagttatgcagttgctgcctcaagcttgctgcctcc 115
||||| |||||||| |||||||||||||||||||||
Sbjct: 123 aagttgtgcagttgttgcctcaagcttgctgcctcc 158
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 80 aagttatgcagttgctgcctcaagcttgctgcc 112
||||| |||||||| ||||||||||||||||||
Sbjct: 197 aagttgtgcagttgttgcctcaagcttgctgcc 229
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 aagttatgcagttgctgcctcaagcttgctgcctccc 116
||||| |||||||| || |||||||||||||||||||
Sbjct: 86 aagttgtgcagttgttgtctcaagcttgctgcctccc 122
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 84 tatgcagttgctgcctcaagcttgctgcc 112
||||||||||||||||| |||||||||||
Sbjct: 39 tatgcagttgctgcctctagcttgctgcc 11
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 aagttatgcagttgctgcctcaagcttgctgcctccc 116
||||| |||||||| || |||||||||||||||||||
Sbjct: 88 aagttgtgcagttgttgtctcaagcttgctgcctccc 124
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 86 tgcagttgctgcctcaagcttgctgcctccc 116
|||||||| || |||||||||||||||||||
Sbjct: 92 tgcagttgttgtctcaagcttgctgcctccc 122
