miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28949_hsa-mir-632:mirbase
Length = 94
Score = 163 bits (82), Expect = 3e-41
Identities = 91/94 (96%)
Strand = Plus / Plus
Query: 1 cgcctcctaccgcagtgcctgacgggaggcggagcggggaacgagaccgtcggccatttt 60
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 cgcctcctaccgcagtgcttgacgggaggcggagcggggaacgaggccgtcggccatttt 60
Query: 61 gtgtctgcttcctgtgggacgtggtggtaaccgt 94
||||||||||||||||||||||||||||| ||||
Sbjct: 61 gtgtctgcttcctgtgggacgtggtggtagccgt 94
>30559_ptr-mir-632:mirbase
Length = 93
Score = 153 bits (77), Expect = 3e-38
Identities = 86/89 (96%)
Strand = Plus / Plus
Query: 1 cgcctcctaccgcagtgcctgacgggaggcggagcggggaacgagaccgtcggccatttt 60
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 cgcctcctaccgcagtgcttgacgggaggcggagcggggaacgaggccgtcggccatttt 60
Query: 61 gtgtctgcttcctgtgggacgtggtggta 89
||||||||||||||||||||| |||||||
Sbjct: 61 gtgtctgcttcctgtgggacgcggtggta 89
>28067_mml-mir-632:mirbase
Length = 94
Score = 139 bits (70), Expect = 4e-34
Identities = 88/94 (93%)
Strand = Plus / Plus
Query: 1 cgcctcctaccgcagtgcctgacgggaggcggagcggggaacgagaccgtcggccatttt 60
|||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1 cgcctcctgccgcagtgcctgacgggaggcggagcggcgaacgaggccgtcggccatttt 60
Query: 61 gtgtctgcttcctgtgggacgtggtggtaaccgt 94
||||||||||||||||||||| ||| ||| ||||
Sbjct: 61 gtgtctgcttcctgtgggacgcggtcgtagccgt 94
>26893_cfa-mir-632:mirbase
Length = 97
Score = 89.7 bits (45), Expect = 3e-19
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 cgcctcctaccgcagtgcctgacgggaggcggagcggggaacgagaccgtcggccatttt 60
||||||| ||||||||||||||||||| | |||||| ||||||| |||||||||||||
Sbjct: 1 cgcctccggccgcagtgcctgacgggag-cagagcggcgaacgagggcgtcggccatttt 59
Query: 61 gtgtctgcttcctgtgggacg 81
||||||| |||||||||||||
Sbjct: 60 gtgtctgtttcctgtgggacg 80
>27245_eca-mir-632:mirbase
Length = 65
Score = 73.8 bits (37), Expect = 2e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 19 ctgacgggaggcggagcggggaacgagaccgtcggccattttgtgtctgcttcctgtggg 78
||||||||||||||||| | ||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 5 ctgacgggaggcggagcagcgaacgagggcgtcggccattttgtgcctgtttcctgtggg 64
Query: 79 a 79
|
Sbjct: 65 a 65
>32965_rno-mir-632:mirbase
Length = 78
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 49 gtcggccattttgtgtctgcttcctgtgggacgtggtggt 88
||||||||||||||||||| |||||| ||||||||||||
Sbjct: 35 gtcggccattttgtgtctgtttcctgccggacgtggtggt 74
