miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28968_hsa-mir-650:mirbase
Length = 96
Score = 157 bits (79), Expect = 2e-39
Identities = 91/95 (95%)
Strand = Plus / Plus
Query: 1 cagtgctggggtctcaggaggcagctctctcgggacgtctccaccatggcctggtctctg 60
||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||
Sbjct: 1 cagtgctggggtctcaggaggcagcgctctcaggacgtcaccaccatggcctgggctctg 60
Query: 61 ctcctcctcaccctcctcactcagggcacaggtga 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 ctcctcctcaccctcctcactcagggcacaggtga 95
>28078_mml-mir-650a-1:mirbase
Length = 95
Score = 149 bits (75), Expect = 4e-37
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 1 cagtgctggggtctcaggaggcagctctctcgggacgtctccaccatggcctggtctctg 60
|||||||||| |||||||||||||| ||||| ||||||||||||||||| |||| |||||
Sbjct: 1 cagtgctgggatctcaggaggcagcgctctcaggacgtctccaccatggtctgggctctg 60
Query: 61 ctcctcctcaccctcctcactcagggcacaggtga 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 ctcctcctcaccctcctcactcagggcacaggtga 95
>28080_mml-mir-650b:mirbase
Length = 95
Score = 149 bits (75), Expect = 4e-37
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 1 cagtgctggggtctcaggaggcagctctctcgggacgtctccaccatggcctggtctctg 60
||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 1 cagtgctggggtctcaggaggcagcgctctcgggacatctccaccatggcctgggatctg 60
Query: 61 ctcctcctcaccctcctcactcagggcacaggtga 95
|||||| ||||||||||||||||||||||||||||
Sbjct: 61 ctcctcttcaccctcctcactcagggcacaggtga 95
>28079_mml-mir-650a-2:mirbase
Length = 95
Score = 141 bits (71), Expect = 1e-34
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 1 cagtgctggggtctcaggaggcagctctctcgggacgtctccaccatggcctggtctctg 60
|||||||||| |||||||||||||| ||||| |||| |||||||||||| |||| |||||
Sbjct: 1 cagtgctgggatctcaggaggcagcgctctcaggacttctccaccatggtctgggctctg 60
Query: 61 ctcctcctcaccctcctcactcagggcacaggtga 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 ctcctcctcaccctcctcactcagggcacaggtga 95
>30571_ptr-mir-650:mirbase
Length = 95
Score = 139 bits (70), Expect = 4e-34
Identities = 88/94 (93%)
Strand = Plus / Plus
Query: 2 agtgctggggtctcaggaggcagctctctcgggacgtctccaccatggcctggtctctgc 61
||||||||||||| |||||||||| ||||| ||||||| ||||||||||| || ||||||
Sbjct: 1 agtgctggggtcttaggaggcagcgctctcaggacgtcaccaccatggccagggctctgc 60
Query: 62 tcctcctcaccctcctcactcagggcacaggtga 95
||||||||||||||||||||||||||||||||||
Sbjct: 61 tcctcctcaccctcctcactcagggcacaggtga 94
>28082_mml-mir-650d:mirbase
Length = 92
Score = 127 bits (64), Expect = 2e-30
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 1 cagtgctggggtctcaggaggcagctctctcgggacgtctccaccatggcctggtctctg 60
|||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||
Sbjct: 1 cagtgctggggtctcaggagacagtgctgtcgggacgtctccaccatggcctgggctctg 60
Query: 61 ctcctcctcaccctcctcactcagggcacagg 92
|||||||||||||| |||||||| ||||||||
Sbjct: 61 ctcctcctcacccttctcactcaaggcacagg 92
>28081_mml-mir-650c:mirbase
Length = 91
Score = 99.6 bits (50), Expect = 3e-22
Identities = 84/95 (88%), Gaps = 4/95 (4%)
Strand = Plus / Plus
Query: 1 cagtgctggggtctcaggaggcagctctctcgggacgtctccaccatggcctggtctctg 60
|||||||||||| |||||||||||| ||||| |||||||||||||||||| |||||
Sbjct: 1 cagtgctggggtgtcaggaggcagcgctctc----agtctccaccatggcctgggctctg 56
Query: 61 ctcctcctcaccctcctcactcagggcacaggtga 95
||||||||||| ||||||||||| ||||| |||||
Sbjct: 57 ctcctcctcactctcctcactcatggcacgggtga 91
