miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00340;SNORA36;ABDC01299701.1/1392-1522 30608:Microcebus murinus
(gray mouse lemur)
Length = 131
Score = 107 bits (54), Expect = 2e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 1 gaacattgaaactggctagggaaagtgattggatagaaactattattctattcatttatc 60
|||||||||||||||||| || || |||||||||||||| ||||| ||||||||||||||
Sbjct: 58 gaacattgaaactggctacgggaaatgattggatagaaaatattactctattcatttatc 117
Query: 61 cccagcctacaaaa 74
||||||||||||||
Sbjct: 118 cccagcctacaaaa 131
>RF00340;SNORA36;AAGW01325785.1/1194-1323 9986:Oryctolagus cuniculus
(rabbit)
Length = 130
Score = 95.6 bits (48), Expect = 8e-20
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 1 gaacattgaaactggctagggaaagtgattggatagaaactattattctattcatttatc 60
|||||||||||||||||||||||| | || ||||||||| | ||||||||||||| ||||
Sbjct: 57 gaacattgaaactggctagggaaaatcatcggatagaaaatgttattctattcatatatc 116
Query: 61 cccagcctacaa 72
||||||||||||
Sbjct: 117 cccagcctacaa 128
>RF00340;SNORA36;AC158963.3/185991-186122 10090:Mus musculus (house
mouse)
Length = 132
Score = 79.8 bits (40), Expect = 5e-15
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gaacattgaaactggctagggaaagtgattggatagaaactattattctattcattta-t 59
|||||||||| |||||| |||||| ||| |||||||||| ||||||||||||||||| |
Sbjct: 58 gaacattgaagctggctggggaaaatgactggatagaaaacattattctattcatttact 117
Query: 60 ccccagcctaca 71
||||||||||||
Sbjct: 118 ccccagcctaca 129
>RF00340;SNORA36;AAKN02019180.1/128364-128494 10141:Cavia porcellus
(domestic guinea pig)
Length = 131
Score = 75.8 bits (38), Expect = 8e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 8 gaaactggctagggaaagtgattggatagaaactattattctattcatttatccccagcc 67
|||| ||||||| |||| |||||||||||||| | |||||||||||||||||| | ||||
Sbjct: 65 gaaagtggctagagaaaatgattggatagaaaatgttattctattcatttatctctagcc 124
Query: 68 tacaaa 73
||||||
Sbjct: 125 tacaaa 130
>RF00340;SNORA36;AAHX01095142.1/71787-71884 10116:Rattus
norvegicus (Norway rat)
Length = 98
Score = 69.9 bits (35), Expect = 5e-12
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 12 ctggctagggaaagtgattggatagaaactattattctattcattta-tccccagcctac 70
|||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 35 ctggctggggaaaaagattggatagaaaacattattctattcatttactccccagcctac 94
Query: 71 aaa 73
|||
Sbjct: 95 aaa 97
>RF00340;SNORA36;ABVD01199245.1/1451-1320 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 132
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 7 tgaaactggctagggaaagtgattggatagaaactattattctattcatttatc-cccag 65
|||||| |||||||| || |||||||||||||| ||||||||| | ||||| || | |||
Sbjct: 64 tgaaacaggctaggggaaatgattggatagaaaatattattctgtccatttgtctctcag 123
Query: 66 cctacaaaa 74
|||||||||
Sbjct: 124 cctacaaaa 132
>RF00340;SNORA36;CABD01065828.1/6971-6850 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 122
Score = 52.0 bits (26), Expect = 1e-06
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 26 tgattggatagaaactattattctattcatttatc-cccagcctacaaaa 74
||||||| |||||| ||||||||||||||||| | ||||||||||||||
Sbjct: 73 tgattgggtagaaagtattattctattcatttgcctcccagcctacaaaa 122
>RF00340;SNORA36;AAKN02004756.1/29029-28904 10141:Cavia porcellus
(domestic guinea pig)
Length = 126
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 29 ttggatagaaactattattctattcatttatccc 62
||||||||||| | ||||||||||||||||||||
Sbjct: 82 ttggatagaaaatgttattctattcatttatccc 115
>RF00340;SNORA36;AAIY01051702.1/1601-1471 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 131
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 acattgaaactggctagggaaagtgattggatagaaactattattctattca-tttatcc 61
||||| |||| |||| |||||| |||| || |||||| |||||||||||||| ||| | |
Sbjct: 59 acattaaaacaggcttgggaaaatgatggggtagaaaatattattctattcactttgttc 118
Query: 62 ccagcctaca 71
||||||||||
Sbjct: 119 ccagcctaca 128
>RF00340;SNORA36;AAIY01703741.1/615-736 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 122
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 acattgaaactggctagggaaagtgattggatagaaactattattctattca-tttatcc 61
||||| |||| |||| |||||| ||| ||| |||||| |||||||||||||| ||| | |
Sbjct: 50 acattaaaacaggcttgggaaaatgactgggtagaaaatattattctattcactttgttc 109
Query: 62 ccagcctaca 71
||||||||||
Sbjct: 110 ccagcctaca 119
>RF00340;SNORA36;AAIY01139424.1/1111-986 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 126
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 acattgaaactggctagggaaagtgattggatagaaactattattctattca-tttatcc 61
||||| |||| |||| |||||| ||| ||| |||||| |||||||||||||| ||| | |
Sbjct: 54 acattaaaacaggcttgggaaaatgactgggtagaaaatattattctattcactttgttc 113
Query: 62 ccagcctaca 71
||||||||||
Sbjct: 114 ccagcctaca 123
>RF00340;SNORA36;AAGU02530612.1/4787-4918 9785:Loxodonta africana
(African savanna elephant)
Length = 132
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 acattgaaactggctagggaaagtgattggatagaaactattattctattcattta-tcc 61
|||||||||| ||||||||||| ||| |||||||||| ||| | |||||||||| | |
Sbjct: 60 acattgaaacgggctagggaaaatgaatggatagaaaacatttctttattcatttatttc 119
Query: 62 ccagcctaca 71
||||||||||
Sbjct: 120 ccagcctaca 129
>RF00340;SNORA36;AC188648.11/111060-110940 9615:Canis lupus
familiaris (dog)
Length = 121
Score = 46.1 bits (23), Expect = 7e-05
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 41 tattattctattcatttatc-cccagcctacaaaa 74
||||| |||||||||||||| ||||||||||||||
Sbjct: 87 tattactctattcatttatctcccagcctacaaaa 121
>RF00340;SNORA36;AAQR01359701.1/751-883 30611:Otolemur garnettii
(small-eared galago)
Length = 133
Score = 44.1 bits (22), Expect = 3e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 3 acattgaaactggctagggaaagtgattggatagaaactattattctattcatttatc 60
||||||||| || ||||| || ||| |||||||||| ||||||||||||||||||
Sbjct: 60 acattgaaatgggataggggaaatgactggatagaaagccttattctattcatttatc 117
>RF00340;SNORA36;AANU01185661.1/26654-26575 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 4 cattgaaactggctagggaaagtgattggatagaaactattattctattcattt 57
|||| |||| |||||||| | ||||||| | ||| | |||||||||||||||||
Sbjct: 9 cattaaaacaggctagggtaggtgattgcacagagaatattattctattcattt 62
