miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00917;mir-708;ABRQ01033298.1/1355-1442 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 157 bits (79), Expect = 3e-38
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 2 actgccctcaaggagcttacaatctagctgggggtaaatgacttgcacatgaacacaact 61
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 2 actgccctcaaggagcttacaatctagctgggggtaaaagacttgcacatgaacgcaact 61
Query: 62 agactgtgagcttctagagggcaggga 88
|||||||||||||||||||||||||||
Sbjct: 62 agactgtgagcttctagagggcaggga 88
>RF00655;mir-28;ABRQ01033298.1/1444-1352 9813:Procavia capensis
(cape rock hyrax)
Length = 93
Score = 157 bits (79), Expect = 3e-38
Identities = 85/87 (97%)
Strand = Plus / Minus
Query: 2 actgccctcaaggagcttacaatctagctgggggtaaatgacttgcacatgaacacaact 61
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 89 actgccctcaaggagcttacaatctagctgggggtaaaagacttgcacatgaacgcaact 30
Query: 62 agactgtgagcttctagagggcaggga 88
|||||||||||||||||||||||||||
Sbjct: 29 agactgtgagcttctagagggcaggga 3
>RF00655;mir-28;AAEX02028916.1/2970-3062 9615:Canis lupus
familiaris (dog)
Length = 93
Score = 143 bits (72), Expect = 4e-34
Identities = 84/88 (95%)
Strand = Plus / Minus
Query: 1 aactgccctcaaggagcttacaatctagctgggggtaaatgacttgcacatgaacacaac 60
|||||||||||||||||||||||||||||||||||| || | ||||||||||||| ||||
Sbjct: 90 aactgccctcaaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaac 31
Query: 61 tagactgtgagcttctagagggcaggga 88
||||||||||||||||||||||||||||
Sbjct: 30 tagactgtgagcttctagagggcaggga 3
>RF00917;mir-708;AAYZ01001621.1/4751-4664 9978:Ochotona princeps
(American pika)
Length = 88
Score = 133 bits (67), Expect = 4e-31
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 3 ctgccctcaaggagcttacaatctagctgggggtaaatgacttgcacatgaacacaacta 62
|||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||
Sbjct: 3 ctgccctcaaggagcttacaatctagctggggctgaatgacttgcacgagaacacaacta 62
Query: 63 gactgtgagcttctagagggcag 85
|||||||||||||||||||||||
Sbjct: 63 gactgtgagcttctagagggcag 85
>RF00655;mir-28;AAYZ01598458.1/215-123 9978:Ochotona princeps
(American pika)
Length = 93
Score = 133 bits (67), Expect = 4e-31
Identities = 79/83 (95%)
Strand = Plus / Minus
Query: 3 ctgccctcaaggagcttacaatctagctgggggtaaatgacttgcacatgaacacaacta 62
|||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||
Sbjct: 88 ctgccctcaaggagcttacaatctagctggggctgaatgacttgcacgagaacacaacta 29
Query: 63 gactgtgagcttctagagggcag 85
|||||||||||||||||||||||
Sbjct: 28 gactgtgagcttctagagggcag 6
>RF00917;mir-708;ABRP01067784.1/10295-10387 132908:Pteropus
vampyrus (large flying fox)
Length = 93
Score = 121 bits (61), Expect = 2e-27
Identities = 85/93 (91%), Gaps = 5/93 (5%)
Strand = Plus / Plus
Query: 1 aactgccctcaaggagcttacaatctagctgggggtaaatga-----cttgcacatgaac 55
||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 1 aactgccctcaaggagcttacaatctagctgggggtaaactaaacaacttgcacatgaac 60
Query: 56 acaactagactgtgagcttctagagggcaggga 88
||||||||||||||||||||||||||||||||
Sbjct: 61 gcaactagactgtgagcttctagagggcaggga 93
>RF00655;mir-28;AAGV020456123.1/438-346 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 93
Score = 107 bits (54), Expect = 2e-23
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 2 actgccctcaaggagcttacaatctagctgggggtaaatgacttgcacatgaacacaact 61
||||||||||||||||||||||||||||||||||| | ||| |||||| || | |||||
Sbjct: 89 actgccctcaaggagcttacaatctagctgggggtgagagacctgcacaggatctcaact 30
Query: 62 agactgtgagcttctagagggcaggg 87
|||||| |||||||||||||||||||
Sbjct: 29 agactgggagcttctagagggcaggg 4
>RF00917;mir-708;AAPN01363927.1/2951-2869 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 3 ctgccctcaaggagcttacaatctagctgggg 34
|||||| |||||||||||||||||||| ||||
Sbjct: 3 ctgcccacaaggagcttacaatctagcagggg 34
>RF00655;mir-28;AAPN01363927.1/2867-2954 9258:Ornithorhynchus
anatinus (platypus)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 3 ctgccctcaaggagcttacaatctagctgggg 34
|||||| |||||||||||||||||||| ||||
Sbjct: 83 ctgcccacaaggagcttacaatctagcagggg 52
>RF00917;mir-708;AAPN01136206.1/6818-6887 9258:Ornithorhynchus
anatinus (platypus)
Length = 70
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 ctgccctcaaggagcttacaatc 25
|||||||||||||||||||||||
Sbjct: 3 ctgccctcaaggagcttacaatc 25
>RF00917;mir-708;AAPN01127904.1/321-240 9258:Ornithorhynchus
anatinus (platypus)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 cctcaaggagcttacaatctagc 29
|||||||||||||||||||||||
Sbjct: 7 cctcaaggagcttacaatctagc 29
>RF00655;mir-28;AAPN01127904.1/238-324 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 7 cctcaaggagcttacaatctagc 29
|||||||||||||||||||||||
Sbjct: 78 cctcaaggagcttacaatctagc 56
>RF00655;mir-28;AAPN01136206.1/6889-6815 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 3 ctgccctcaaggagcttacaatc 25
|||||||||||||||||||||||
Sbjct: 70 ctgccctcaaggagcttacaatc 48
>RF00655;mir-28;AAPN01213949.1/9261-9154 9258:Ornithorhynchus
anatinus (platypus)
Length = 108
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 55 cacaactagactgtgagcttctagagggcaggga 88
|||||| ||||||| ||||||| |||||||||||
Sbjct: 73 cacaaccagactgtaagcttcttgagggcaggga 106
