miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054366.1/427-503 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 133 bits (67), Expect = 4e-31
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 8 tacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacctggtcca 67
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 3 tacatgagatggttgaccagagagcacacgctttatttatgacgtttgtgacctggtcca 62
Query: 68 ctaaccctcagtatc 82
|||||||||||||||
Sbjct: 63 ctaaccctcagtatc 77
>RF00641;mir-154;AAGU02503119.1/1083-1160 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 125 bits (63), Expect = 1e-28
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 12 tgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacctggtccactaa 71
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 8 tgagatggttgaccagagagcacacgctttatttatgacgtttgtgacctggtccactaa 67
Query: 72 ccctcagtatc 82
|||||||||||
Sbjct: 68 ccctcagtatc 78
>RF00641;mir-154;AAYZ01216262.1/1115-1191 9978:Ochotona princeps
(American pika)
Length = 77
Score = 107 bits (54), Expect = 2e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 6 gatacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacctggtc 65
||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 gatacctgaggtggttgaccagagagcacacgctgtatttgtgccgtttgtgacctggtc 60
Query: 66 cactaaccctcagt 79
|||| | |||||||
Sbjct: 61 cactgaacctcagt 74
>RF00641;mir-154;ABRQ01054364.1/4611-4690 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 35 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 82
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 33 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 80
