miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01033;mir-767;ABRT010927949.1/452-343 9478:Tarsius syrichta
(Philippine tarsier)
Length = 110
Score = 167 bits (84), Expect = 4e-41
Identities = 99/104 (95%)
Strand = Plus / Plus
Query: 3 ttttatactgtaggtttttgctcatgcaccatggttgtctgagcatgcagcatgcttgtc 62
||||||| | ||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3 ttttatattatagatttttgctcatgcaccatggttgtctgagcatgcagcatgtttgtc 62
Query: 63 tgctcataccccatggtttctgagcaggaaccttcattgtctac 106
||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 63 tgctcataccccatggtttctgagcaggaaccttcattgcctac 106
>RF01033;mir-767;ABRO01195452.1/11056-10948 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 109
Score = 157 bits (79), Expect = 4e-38
Identities = 94/99 (94%)
Strand = Plus / Plus
Query: 11 tgtaggtttttgctcatgcaccatggttgtctgagcatgcagcatgcttgtctgctcata 70
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 10 tgtaggtttttgctcatgcaccatggttgtctgagcacgcagcatgtttgtctgctcata 69
Query: 71 ccccatggtttctgagcaggaaccttcattgtctactgc 109
| |||||||| ||||||||||||||| ||||||||||||
Sbjct: 70 cgccatggttcctgagcaggaaccttaattgtctactgc 108
>RF01033;mir-767;AAKN02056081.1/10707-10816 10141:Cavia porcellus
(domestic guinea pig)
Length = 110
Score = 149 bits (75), Expect = 9e-36
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 13 taggtttttgctcatgcaccatggttgtctgagcatgcagcatgcttgtctgctcatacc 72
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 13 taggcttttgctcatgcaccatggttgtctgagcacgcagcatgcttgtctgctcatacc 72
Query: 73 ccatggtttctgagcaggaaccttcattgtctact 107
|||||||| ||||||||||||||||| || |||||
Sbjct: 73 ccatggttcctgagcaggaaccttcactgcctact 107
>RF01033;mir-767;AAQQ01376207.1/2062-1948 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 115
Score = 145 bits (73), Expect = 1e-34
Identities = 91/97 (93%)
Strand = Plus / Plus
Query: 13 taggtttttgctcatgcaccatggttgtctgagcatgcagcatgcttgtctgctcatacc 72
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 taggtttttgcttatgcaccatggttgtctgagcatgcagcatgcttgtctgctcatacg 77
Query: 73 ccatggtttctgagcaggaaccttcattgtctactgc 109
|||||||| |||||||||| |||||||| |||||||
Sbjct: 78 ccatggttcctgagcaggagccttcattaactactgc 114
>RF01033;mir-767;AANG01462482.1/1257-1148 9685:Felis catus (domestic
cat)
Length = 110
Score = 137 bits (69), Expect = 3e-32
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 13 taggtttttgctcatgcaccatggttgtctgagcatgcagcatgcttgtctgctcatacc 72
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 13 taggtttttgctcatgcaccatggttgtctgagcatgcaacatgcttgtgtgctcatacc 72
Query: 73 ccatggtttctgagcaggaaccttcattg 101
|||||||| |||||||| || ||||||||
Sbjct: 73 ccatggttcctgagcagaaaacttcattg 101
>RF01033;mir-767;ABRN01225529.1/11202-11093 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 110
Score = 129 bits (65), Expect = 8e-30
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 13 taggtttttgctcatgcaccatggttgtctgagcatgcagcatgcttgtctgctcatacc 72
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 13 taggtttttgctcatgcaccatgcttgtctgaccatgcagcatgcttgtctgctcatact 72
Query: 73 ccatggtttctgagcaggaac 93
|||||||| ||||||||||||
Sbjct: 73 ccatggttcctgagcaggaac 93
>RF01033;mir-767;AAPY01458331.1/263-154 37347:Tupaia belangeri
(northern tree shrew)
Length = 110
Score = 123 bits (62), Expect = 5e-28
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 11 tgtaggtttttgctcatgcaccatggttgtctgagcatgcagcatgcttgtctgctcata 70
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 11 tgtaggtttttgctcatgcaccatggttgtctgagcatgcagtgtgtttgtctgctcatt 70
Query: 71 ccccatggtttctgagcaggaacctt 96
|||||||||| | |||||||||||||
Sbjct: 71 ccccatggttcccgagcaggaacctt 96
>RF01033;mir-767;AANN01683306.1/1622-1513 9365:Erinaceus europaeus
(western European hedgehog)
Length = 110
Score = 113 bits (57), Expect = 5e-25
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 15 ggtttttgctcatgcaccatggttgtctgagcatgcagcatgcttgtctgctcatacccc 74
||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 15 ggtttttgctcctgcaccatggttgtctgagcacggagcatgcttgtctgctcatacgcc 74
Query: 75 atggtttctgagcaggaacct 95
|||||| |||||||||||||
Sbjct: 75 atggttcgtgagcaggaacct 95
>RF01033;mir-767;ABRR01302337.1/3362-3253 30538:Lama pacos (alpaca)
Length = 110
Score = 113 bits (57), Expect = 5e-25
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 21 tgctcatgcaccatggttgtctgagcatgcagcatgcttgtctgctcataccccatggtt 80
|||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 21 tgcttatgcaccatggttgtctgaacatacagcatgcttgtctgctcataccccatggtt 80
Query: 81 tctgagcaggaaccttcattg 101
|||||||| |||||| ||||
Sbjct: 81 cctgagcagaaacctttattg 101
>RF01033;mir-767;BX119994.7/165516-165410 10090:Mus musculus (house
mouse)
Length = 107
Score = 97.6 bits (49), Expect = 3e-20
Identities = 85/97 (87%)
Strand = Plus / Plus
Query: 13 taggtttttgctcatgcaccatggttgtctgagcatgcagcatgcttgtctgctcatacc 72
||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 10 taggtttttactcatgcaccatggttgtctgagcacataacatgcttgtctgctcatacc 69
Query: 73 ccatggtttctgagcaggaaccttcattgtctactgc 109
| |||||| |||| ||||| ||| | ||||||||||
Sbjct: 70 ctatggttcctgaagaggaatcttaactgtctactgc 106
>RF01033;mir-767;AAHX01006705.1/22154-22047 10116:Rattus
norvegicus (Norway rat)
Length = 108
Score = 95.6 bits (48), Expect = 1e-19
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 13 taggtttttgctcatgcaccatggttgtctgagcatgcagcatgcttgtctgctcatacc 72
|||| |||||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct: 10 taggcttttgctcatgcactgtatttgtctgagcatgcaccatgcttgtctgctcatacc 69
Query: 73 ccatggtttctgagcaggaa 92
||||||| |||||||||||
Sbjct: 70 tcatggttcctgagcaggaa 89
>RF01033;mir-767;AAEX02003804.1/1819-1927 9615:Canis lupus
familiaris (dog)
Length = 109
Score = 91.7 bits (46), Expect = 2e-18
Identities = 83/94 (88%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 13 taggtttttgctcatgcaccatggttgtctgagcatgcagcatgcttgtctgctcatacc 72
|||||||||||||| ||| || |||||||||||||||||||||||||| | |||||| |
Sbjct: 13 taggtttttgctcacacac-attgttgtctgagcatgcagcatgcttgtatactcatatc 71
Query: 73 ccatggtttctgagcaggaaccttcattgtctac 106
|||||||| |||||||| || |||||||| ||||
Sbjct: 72 ccatggttcctgagcagaaaacttcattgcctac 105
>RF01033;mir-767;AAPE01553738.1/2480-2372 59463:Myotis lucifugus
(little brown bat)
Length = 109
Score = 85.7 bits (43), Expect = 1e-16
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 16 gtttttgctcatgcaccatggttgtctgagcatgcagcatgcttgtctgctcatacccc 74
||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| |||||
Sbjct: 16 gtttttgctcatgcaccgtggttgtctaagcatgcagcatgcttggctgctcacacccc 74
>RF01033;mir-767;ABDC01642751.1/245-138 30608:Microcebus murinus
(gray mouse lemur)
Length = 108
Score = 81.8 bits (41), Expect = 2e-15
Identities = 71/77 (92%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 16 gtttttgctcatgcaccatggttgtctgagcatgcagcatgcttgtctgctcatacccca 75
|||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| | ||
Sbjct: 16 gtttttgctcatgcgccatggt-gtctgagcatgcagcatgcttgtctg-tcatatctca 73
Query: 76 tgg-tttctgagcagga 91
||| |||||||||||||
Sbjct: 74 tggttttctgagcagga 90
>RF01033;mir-767;ABRP01240904.1/9749-9643 132908:Pteropus vampyrus
(large flying fox)
Length = 107
Score = 61.9 bits (31), Expect = 2e-09
Identities = 84/101 (83%), Gaps = 3/101 (2%)
Strand = Plus / Plus
Query: 1 gcttttatactgtaggtttttgctcatgcaccatggttgtctgagcatgcagcatgcttg 60
|||||| ||||||| | ||| |||||||||||| ||| |||||||||||| || ||
Sbjct: 1 gcttttgtactgtaagctttcgctcatgcaccacggtcgtctgagcatgcg---tgtttc 57
Query: 61 tctgctcataccccatggtttctgagcaggaaccttcattg 101
||||||||||||| |||||| |||||||||| | ||||||
Sbjct: 58 tctgctcatacccaatggttcttgagcaggaaacctcattg 98
