miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00887;mir-802;AANU01260813.1/2882-2789 9544:Macaca mulatta
(rhesus monkey)
Length = 94
Score = 170 bits (86), Expect = 2e-42
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 1 gttctgttatttgcagtcagtaacaaagattcatccttgtgtccatcacgcagcaaggag 60
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 gttctgttatttgcaatcagtaacaaagattcatccttgtgtccatcatgcagcaaggag 60
Query: 61 aatctttgtcacttagtgtaattaatagctggac 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 aatctttgtcacttagtgtaattaatagctggac 94
>RF00887;mir-802;ABRN01256812.1/3792-3885 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 94
Score = 143 bits (72), Expect = 5e-34
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 7 ttatttgcagtcagtaacaaagattcatccttgtgtccatcacgcagcaaggagaatctt 66
|||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||
Sbjct: 7 ttatttgcagtcagtaacaaagattcgtccttgtgtccatcaagcaacaaggagaatctt 66
Query: 67 tgtcacttagtgtaattaatagct 90
||||||||||||||||||||||||
Sbjct: 67 tgtcacttagtgtaattaatagct 90
>RF00887;mir-802;AAIY01234787.1/6341-6434 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 94
Score = 137 bits (69), Expect = 3e-32
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 11 ttgcagtcagtaacaaagattcatccttgtgtccatcacgcagcaaggagaatctttgtc 70
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 11 ttgcagtcagtaacaaagattcatccttgtgtccatcgagcagcaaggagagtctttgtc 70
Query: 71 acttagtgtaattaatagctg 91
|||||||||||||||||||||
Sbjct: 71 acttagtgtaattaatagctg 91
>RF00887;mir-802;AAGW01512228.1/1362-1455 9986:Oryctolagus
cuniculus (rabbit)
Length = 94
Score = 131 bits (66), Expect = 2e-30
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 2 ttctgttatttgcagtcagtaacaaagattcatccttgtgtccatcacgcagcaaggaga 61
|||| ||||||||||||||||||||||||||| ||||| ||| ||||||| ||||||||
Sbjct: 2 ttctattatttgcagtcagtaacaaagattcagccttgggtctgtcacgcaacaaggaga 61
Query: 62 atctttgtcacttagtgtaattaatagctg 91
||||||||||||||||||||||||||||||
Sbjct: 62 atctttgtcacttagtgtaattaatagctg 91
>RF00887;mir-802;AAKN02054460.1/185170-185077 10141:Cavia
porcellus (domestic guinea pig)
Length = 94
Score = 123 bits (62), Expect = 4e-28
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 2 ttctgttatttgcagtcagtaacaaagattcatccttgtgtccatcacgcagcaaggaga 61
|||| |||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct: 2 ttctattatttgcagtcagtaacaaagattcattcttgtgtcaatcacacaacaaggaga 61
Query: 62 atctttgtcacttagtgtaattaatagctg 91
||||||||||||| |||||||||||||||
Sbjct: 62 atctttgtcacttcatgtaattaatagctg 91
>RF00887;mir-802;AAQR01605094.1/1212-1305 30611:Otolemur garnettii
(small-eared galago)
Length = 94
Score = 119 bits (60), Expect = 7e-27
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 7 ttatttgcagtcagtaacaaagattcatccttgtgtccatcacgcagcaaggagaatctt 66
||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct: 7 ttatttgcagtcagtaacaaagattcatccttgtgtccatcgtgcaaccaggagaatctt 66
Query: 67 tgtcacttagtgtaattaatagctggac 94
||||||| ||||| ||||||||| ||||
Sbjct: 67 tgtcactcagtgtgattaatagccggac 94
>RF00887;mir-802;ABRT010235605.1/862-955 9478:Tarsius syrichta
(Philippine tarsier)
Length = 94
Score = 111 bits (56), Expect = 2e-24
Identities = 80/88 (90%)
Strand = Plus / Plus
Query: 1 gttctgttatttgcagtcagtaacaaagattcatccttgtgtccatcacgcagcaaggag 60
||||| |||||||||||||||||||||||||||||| |||||| |||| | | ||| |||
Sbjct: 1 gttctattatttgcagtcagtaacaaagattcatccctgtgtctatcatgtaacaaagag 60
Query: 61 aatctttgtcacttagtgtaattaatag 88
||||||||| ||||||||||||||||||
Sbjct: 61 aatctttgttacttagtgtaattaatag 88
>RF00887;mir-802;CAAA01070983.1/4458-4365 10090:Mus musculus
(house mouse)
Length = 94
Score = 101 bits (51), Expect = 2e-21
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 7 ttatttgcagtcagtaacaaagattcatccttgtgtccatcacgcagcaaggagaatctt 66
||||||||| ||||||||||||||||||||||||||| |||| || || ||||| ||||
Sbjct: 7 ttatttgcaatcagtaacaaagattcatccttgtgtcaatcatacaacacggagagtctt 66
Query: 67 tgtcacttagtgtaattaatagc 89
||||||| |||||||||||||||
Sbjct: 67 tgtcactcagtgtaattaatagc 89
>RF00887;mir-802;AAQQ01243660.1/144-237 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 94
Score = 95.6 bits (48), Expect = 1e-19
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 3 tctgttatttgcagtcagtaacaaagattcatccttgtgtccatcacgcagcaaggagaa 62
||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||||| |||
Sbjct: 3 tctgttagttgcagtcagtaacagagattcatccttgtgtcgatcacgcaacaaggggaa 62
Query: 63 tctttgtcacttagtgtaattaat 86
|| |||||||| ||||||||||
Sbjct: 63 tcgctgtcacttcctgtaattaat 86
>RF00887;mir-802;ABRO01068093.1/7346-7439 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 93.7 bits (47), Expect = 4e-19
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 7 ttatttgcagtcagtaacaaagattcatccttgtgtccatcacgcagcaaggagaatctt 66
||||||||||||||||||||||||||||||||||||| |||| || ||||| | ||||
Sbjct: 7 ttatttgcagtcagtaacaaagattcatccttgtgtcaatcatacaacaaggggggtctt 66
Query: 67 tgtcacttagtgtaattaatagc 89
||||||| ||||||| |||||||
Sbjct: 67 tgtcactcagtgtaactaatagc 89
>RF00887;mir-802;ABRT010612023.1/1350-1443 9478:Tarsius syrichta
(Philippine tarsier)
Length = 94
Score = 87.7 bits (44), Expect = 2e-17
Identities = 80/92 (86%)
Strand = Plus / Plus
Query: 2 ttctgttatttgcagtcagtaacaaagattcatccttgtgtccatcacgcagcaaggaga 61
|||| |||||||||||||||||||||||||||||| ||||| ||| | ||| || ||||
Sbjct: 2 ttctattatttgcagtcagtaacaaagattcatccctgtgttcattatgcaacacagaga 61
Query: 62 atctttgtcacttagtgtaattaatagctgga 93
||||| | || ||||||||||||||||||||
Sbjct: 62 atcttcattacctagtgtaattaatagctgga 93
>RF00887;mir-802;AAPN01075186.1/3091-3184 9258:Ornithorhynchus
anatinus (platypus)
Length = 94
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 2 ttctgttatttgcagtcagtaacaaagattcatccttgtgtccatcacgcagcaaggaga 61
||||||| |||||||||||||||||||||||||||||||||| | ||| || ||||
Sbjct: 2 ttctgtttcttgcagtcagtaacaaagattcatccttgtgtcctgtaagcaacagggagg 61
Query: 62 atctttgtcacttagtgtaattaat 86
||||||||||| |||| |||||||
Sbjct: 62 gtctttgtcactgagtgcaattaat 86
>RF00887;mir-802;AAGU02174355.1/1524-1591 9785:Loxodonta africana
(African savanna elephant)
Length = 68
Score = 60.0 bits (30), Expect = 5e-09
Identities = 56/64 (87%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 14 cagtcagtaacaaagattcatcct---tgtgtccatcacgcagcaaggagaatctttgtc 70
|||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||||
Sbjct: 1 cagtcagtaacaaagattcatcacatatgtgtccatcaagcaacaaggagagtctttgtc 60
Query: 71 actt 74
||||
Sbjct: 61 actt 64
