miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00933;mir-875;ABRQ01087343.1/1920-1844 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 123 bits (62), Expect = 3e-28
Identities = 72/74 (97%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 4 gtggtactatacctcagttttatcaggtgttctt-aaaatcacctggaaatactgaggtt 62
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 63
Query: 63 gtgtctcactgaac 76
||||||||| ||||
Sbjct: 64 gtgtctcaccgaac 77
>RF00933;mir-875;CAAA01125963.1/23910-23986 10090:Mus musculus
(house mouse)
Length = 77
Score = 95.6 bits (48), Expect = 7e-20
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 4 gtggtactatacctcagttttatcaggtgttc-ttaaaatcacctggaaatactgaggtt 62
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
Sbjct: 4 gtggtactatacctcagttttatcaggtgttcattaaaatcacctgaaaatactgaggct 63
Query: 63 gtgtctcactga 74
||| |||||||
Sbjct: 64 atgtttcactga 75
>RF00933;mir-875;AAFR03006570.1/12434-12510 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 77
Score = 83.8 bits (42), Expect = 3e-16
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 4 gtggtactatacctcagttttatcaggtgttc-ttaaaatcacctggaaatactgaggtt 62
||||||| |||||||||| |||||||||||| |||||||||||||||||| ||||||||
Sbjct: 4 gtggtacaatacctcagtcttatcaggtgttaattaaaatcacctggaaatgctgaggtt 63
Query: 63 gtgtctcactgaac 76
| || |||||||||
Sbjct: 64 gcgtttcactgaac 77
>RF00933;mir-875;AAWZ01028772.1/75719-75643 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 65.9 bits (33), Expect = 7e-11
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 ttagtggtactatacctcagttttatcaggtgttct-taaaatcacctggaaatactgag 59
|||||||||| ||||||||| |||||||||||| | || | |||||||||| |||||||
Sbjct: 1 ttagtggtacaatacctcagccttatcaggtgttgtatatattcacctggaagtactgag 60
Query: 60 gttgtgtctcactgaac 76
|||| || |||||||||
Sbjct: 61 gttgagtttcactgaac 77
